SMTL ID : 3ktk.1

Structure of ClpP in complex with ADEP2 in triclinic crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-14-mer

Ligands

14 x CXP- WFP- SER- PRO- YCP- ALA- MP8: Acyldepsipeptide 2(Non-covalent)

CXP-WFP-SER-PRO-YCP-ALA-MP8.1: 17 residues within 4Å: Chain A: V.44, L.48, A.52, D.78, T.79, F.82 Chain B: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.2: 18 residues within 4Å: Chain A: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Chain G: V.44, L.48, F.49, A.52, D.78, T.79, F.82 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.3: 17 residues within 4Å: Chain E: V.44, L.48, D.78, T.79, F.82, K.84 Chain F: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.4: 19 residues within 4Å: Chain B: V.44, L.48, F.49, A.52, D.78, T.79, F.82, K.84 Chain C: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.5: 18 residues within 4Å: Chain C: V.44, L.48, A.52, T.79, F.82, K.84 Chain D: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, K.187, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.6: 17 residues within 4Å: Chain D: V.44, L.48, F.49, D.78, T.79, F.82 Chain E: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.7: 17 residues within 4Å: Chain F: V.44, L.48, F.49, D.78, T.79, F.82 Chain G: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.8: 18 residues within 4Å: Chain H: V.44, L.48, A.52, D.78, T.79, F.82, K.84 Chain I: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.9: 18 residues within 4Å: Chain H: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Chain N: V.44, L.48, F.49, A.52, D.78, T.79, F.82 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.10: 17 residues within 4Å: Chain L: V.44, L.48, A.52, D.78, T.79, F.82 Chain M: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.11: 17 residues within 4Å: Chain I: V.44, L.48, F.49, A.52, T.79, F.82 Chain J: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.12: 17 residues within 4Å: Chain J: V.44, L.48, A.52, D.78, T.79, F.82 Chain K: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.13: 17 residues within 4Å: Chain K: V.44, L.48, F.49, A.52, T.79, F.82 Chain L: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available CXP-WFP-SER-PRO-YCP-ALA-MP8.14: 16 residues within 4Å: Chain M: V.44, L.48, D.78, T.79, F.82 Chain N: R.22, L.23, D.26, I.28, S.60, Y.62, I.90, I.92, Y.112, L.114, L.189 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, B.-G. et al., Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-03-23

Peptides

ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

ATP-dependent Clp protease proteolytic subunit

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