SMTL ID : 3kyc.1

Human SUMO E1 complex with a SUMO1-AMP mimic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.178, C.181, C.461, C.464 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.178, B:C.181, B:C.461, B:C.464

1 x JZU: 5'-deoxy-5'-(sulfamoylamino)adenosine(Covalent)

JZU.2: 19 residues within 4Å: Chain B: G.44, G.46, G.47, D.68, L.69, D.70, R.79, Q.80, K.92, D.114, S.115, I.116, M.117, A.135, L.136, D.137, N.138, A.141 Chain C: G.97 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.46, B:G.47, B:L.69, B:R.79, B:K.92, B:S.115, B:I.116, B:A.135, B:D.137, B:N.138, C:G.97 Water bridges: B:Q.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olsen, S.K. et al., Active site remodelling accompanies thioester bond formation in the SUMO E1. Nature (2010)

Release Date

2010-02-16

Peptides

SUMO-activating enzyme subunit 1: A
SUMO-activating enzyme subunit 2: B
Small ubiquitin-related modifier 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

SUMO-activating enzyme subunit 1

SUMO-activating enzyme subunit 2

Small ubiquitin-related modifier 1

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