SMTL ID : 3kyf.1 (1 other biounit)

Crystal structure of P4397 complexed with c-di-GMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 6 residues within 4Å: Chain A: R.116, R.120, H.194 Ligands: 5GP.2, 5GP.3, 5GP.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.120, A:R.120 Water bridges: A:R.116, A:R.116, A:K.157, A:K.157, A:R.193 Salt bridges: A:R.116, A:K.157 pi-Stacking: A:H.194, A:H.194 5GP.2: 7 residues within 4Å: Chain A: F.77, G.80, Q.114, R.115, R.116 Ligands: 5GP.1, 5GP.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.114, A:Q.114, A:R.115, A:R.115 Water bridges: A:R.82, A:R.116, A:R.116 pi-Cation interactions: A:R.116 5GP.3: 15 residues within 4Å: Chain A: R.120, D.150, I.151, S.152, T.154, G.155, C.156, K.157, R.193, H.194, G.207, V.208, R.209 Ligands: 5GP.1, 5GP.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.117, A:S.152, A:S.152, A:T.154, A:K.157, A:R.209 Water bridges: A:R.120, A:D.150, A:T.154, A:T.154 Salt bridges: A:D.150, A:R.193 pi-Cation interactions: A:R.120 5GP.4: 7 residues within 4Å: Chain A: R.115, R.116, N.117, R.120 Ligands: 5GP.1, 5GP.2, 5GP.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.115, A:R.115, A:R.115, A:R.116, A:N.117, A:R.120, A:R.120 Water bridges: A:R.82, A:N.117 Salt bridges: A:R.120 pi-Cation interactions: A:R.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ko, J. et al., Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins. J.Mol.Biol. (2010)

Release Date

2010-04-14

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein

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