SMTL ID : 3l01.1 (1 other biounit)

Crystal structure of monomeric glycogen synthase from Pyrococcus abyssi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 12 residues within 4Å: Chain A: K.159, E.172, L.173, P.175, Y.176, P.177, D.178, I.179, D.180, H.183, T.184, Y.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.173, A:D.180, A:T.184, A:T.184, A:Y.187

3 x K: POTASSIUM ION(Non-covalent)

K.2: 3 residues within 4Å: Chain A: E.341, F.343, G.344 No protein-ligand interaction detected (PLIP) K.3: 2 residues within 4Å: Chain A: E.61, E.62 No protein-ligand interaction detected (PLIP) K.4: 1 residues within 4Å: Chain A: R.197 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: I.56, R.57, R.107 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: G.18, G.19 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: W.204, R.208 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: Y.91, D.130, H.132, H.153, R.154 Ligands: GOL.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.132 GOL.9: 8 residues within 4Å: Chain A: Y.91, W.95, L.98, W.131, H.132, R.154, N.156 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz, A. et al., Processivity and Subcellular Localization of Glycogen Synthase Depend on a Non-catalytic High Affinity Glycogen-binding Site. J.Biol.Chem. (2011)

Release Date

2010-12-29

Peptides

GlgA glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GlgA glycogen synthase

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