SMTL ID : 3l1w.1 (2 other biounits)

The crystal structure of a functionally unknown conserved protein from Enterococcus faecalis V583

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: M.1, K.2, D.35, W.36, S.37, K.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.2, A:S.37, A:S.37 Salt bridges: A:K.82 SO4.2: 4 residues within 4Å: Chain A: I.136, S.137, A.138, R.141 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.138, A:R.141 Water bridges: A:S.137, A:S.137, A:H.139, A:R.141 SO4.3: 4 residues within 4Å: Chain A: F.202, T.203, Y.204, T.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.204, A:T.205 SO4.4: 2 residues within 4Å: Chain A: H.153, K.182 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.153, A:K.182 SO4.8: 6 residues within 4Å: Chain B: M.1, K.2, D.35, W.36, S.37, K.82 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.2, B:S.37 Water bridges: B:D.35, B:S.37, B:S.37 Salt bridges: B:K.82 SO4.9: 4 residues within 4Å: Chain B: I.136, S.137, A.138, R.141 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.138, B:R.141 Water bridges: B:I.136, B:S.137, B:H.139, B:R.141 SO4.10: 4 residues within 4Å: Chain B: F.202, T.203, Y.204, T.205 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.202, B:Y.204, B:T.205 SO4.11: 2 residues within 4Å: Chain B: H.153, K.182 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.153, B:K.182

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: Y.90, F.91, W.114, E.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.114 Water bridges: A:Y.90, A:Y.90, A:Q.98, A:E.151 EDO.12: 6 residues within 4Å: Chain B: G.89, Y.90, F.91, Q.98, W.114, E.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.114, B:E.151, B:E.151 Water bridges: B:Y.90

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 7 residues within 4Å: Chain A: D.232, S.233 Chain B: Y.193, G.194, W.208, T.231 Ligands: FMT.13 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.193, B:T.231, A:S.233 FMT.7: 6 residues within 4Å: Chain A: Y.193, S.229, L.230, T.231 Chain B: D.232 Ligands: FMT.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.229, A:T.231 Water bridges: A:T.231 FMT.13: 7 residues within 4Å: Chain A: D.232 Chain B: Y.193, S.229, L.230, T.231, D.232 Ligands: FMT.6 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.231, B:D.232, B:D.232 Water bridges: A:D.232 FMT.14: 7 residues within 4Å: Chain A: Y.193, G.194, W.208, T.231 Chain B: D.232, S.233 Ligands: FMT.7 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.193, B:S.233 Water bridges: A:G.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a functionally unknown conserved protein from Enterococcus faecalis V583. To be Published

Release Date

2010-01-12

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein

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