SMTL ID : 3l2h.1

Crystal structure of Putative sugar phosphate isomerase (AFE_0303) from Acidithiobacillus ferrooxidans ATCC 23270 at 1.85 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: T.10, A.11, Q.12 Ligand excluded by PLIP CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: K.136 Chain D: R.154 Ligand excluded by PLIP

4 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.3: 8 residues within 4Å: Chain A: I.14, S.15, K.35, L.50, Q.52 Chain D: Y.73, L.75, P.92 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:Y.73, D:P.92 Hydrogen bonds: D:Y.73, A:Q.52 Water bridges: A:S.15 Salt bridges: A:K.35 CXS.8: 11 residues within 4Å: Chain B: I.14, S.15, K.35, L.50, Q.52, V.116 Chain C: Y.73, V.74, L.75, P.92 Ligands: EDO.9 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:Y.73, C:P.92 Hydrogen bonds: B:Q.52 Water bridges: B:S.15, B:K.35, B:K.35 Salt bridges: B:K.35 CXS.16: 8 residues within 4Å: Chain B: Y.73, L.75, G.93 Chain C: I.14, S.15, K.35, L.50, L.75 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.75 Hydrogen bonds: C:S.15 Water bridges: C:S.15 Salt bridges: C:K.35 CXS.19: 7 residues within 4Å: Chain A: Y.73, L.75 Chain D: I.14, S.15, K.35, L.50, L.75 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:L.75, D:L.75, A:Y.73 Water bridges: D:S.15 Salt bridges: D:K.35

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: A.102 Chain D: D.3, T.4, L.7 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.3 EDO.5: 5 residues within 4Å: Chain A: K.6, D.39, A.40, V.41, G.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.6 Water bridges: A:K.6, A:V.41 EDO.6: 7 residues within 4Å: Chain A: R.32, S.59, T.60, H.63, E.70, V.72, H.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.59 Water bridges: A:R.32, A:S.59, A:E.70, A:E.70 EDO.9: 2 residues within 4Å: Chain B: A.11 Ligands: CXS.8 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.11 EDO.10: 8 residues within 4Å: Chain B: R.32, S.59, T.60, H.63, E.70, V.72, H.105, I.107 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.59 Water bridges: B:R.32, B:S.59, B:T.60, B:H.63, B:E.70 EDO.11: 7 residues within 4Å: Chain B: K.78, G.79, T.80, S.108, N.109, D.110, G.111 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.108, B:D.110 Water bridges: B:T.80 EDO.12: 4 residues within 4Å: Chain B: Y.88, P.89 Chain C: R.5, T.10 No protein-ligand interaction detected (PLIP) EDO.13: 4 residues within 4Å: Chain B: R.5, K.6, E.13 Ligands: EDO.14 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.5 Water bridges: B:R.5, B:E.13 EDO.14: 2 residues within 4Å: Chain B: R.5 Ligands: EDO.13 No protein-ligand interaction detected (PLIP) EDO.15: 2 residues within 4Å: Chain B: E.13, A.40 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.13 Water bridges: B:E.13 EDO.17: 8 residues within 4Å: Chain C: R.32, S.59, T.60, H.63, E.70, V.72, H.105, I.107 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.59 Water bridges: C:T.60, C:H.63 EDO.18: 7 residues within 4Å: Chain C: K.78, G.79, T.80, S.108, N.109, D.110, G.111 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.80, C:S.108, C:D.110, C:D.110 Water bridges: C:K.78, C:K.78, C:G.79 EDO.20: 4 residues within 4Å: Chain D: R.137, M.150, I.153, V.155 2 PLIP interactions: 2 interactions with chain D Water bridges: D:I.153, D:I.153 EDO.21: 8 residues within 4Å: Chain D: R.32, S.59, T.60, H.63, E.70, V.72, H.105, I.107 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.59 Water bridges: D:T.60, D:H.63, D:E.70, D:E.70

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative sugar phosphate isomerase (AFE_0303) from Acidithiobacillus ferrooxidans ATCC 23270 at 1.85 A resolution. To be published

Release Date

2009-12-29

Peptides

Putative sugar phosphate isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative sugar phosphate isomerase