SMTL ID : 3l4l.1

Crystal Structure of an Anopheles gambiae Odorant-binding Protein AgamOBP22a with Bound Odorant Benzaldehyde

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x HBX: benzaldehyde(Non-covalent)

HBX.1: 9 residues within 4Å: Chain A: V.42, R.43, G.46, L.51, Y.52, V.58, N.63, A.100, F.104 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.51, A:Y.52, A:Y.52, A:V.58, A:F.104 Hydrogen bonds: A:G.46 pi-Stacking: A:F.104

9 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 2 residues within 4Å: Chain A: D.74, E.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.75, A:E.75 NH4.3: 5 residues within 4Å: Chain A: L.85, E.86, N.89, L.90, H.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.89, A:L.90, A:H.136 NH4.4: 1 residues within 4Å: Chain A: D.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.72 NH4.5: 3 residues within 4Å: Chain A: C.40, R.43, C.44 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.40, A:R.43, A:C.44 NH4.6: 4 residues within 4Å: Chain A: E.9, S.12, A.19, K.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.9, A:S.12 NH4.7: 4 residues within 4Å: Chain A: N.50, D.59, A.62, W.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.50 NH4.8: 1 residues within 4Å: Chain A: S.70 No protein-ligand interaction detected (PLIP) NH4.9: 1 residues within 4Å: Chain A: D.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.72 NH4.10: 2 residues within 4Å: Chain A: L.47, N.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, H. et al., Crystal Structures of an Anopheles gambiae Odorant-binding Protein Agam22a and Complexes with Bound Odorants. To be Published

Release Date

2011-01-12

Peptides

Odorant binding protein (AGAP010409-PA): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Odorant binding protein (AGAP010409-PA)

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