SMTL ID : 3l52.1

Crystal structure of putative orotidine 5'-phosphate decarboxylase from Streptomyces avermitilis MA-4680

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: D.101, K.103, T.161, P.226 Chain B: I.107 Ligands: NA.19 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:I.107, A:T.161 Water bridges: A:Q.69, A:D.101, A:K.103 Salt bridges: A:K.67, A:K.103 ACT.13: 6 residues within 4Å: Chain A: I.107 Chain B: D.101, K.103, T.161, P.226 Ligands: NA.7 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:I.107, B:T.161 Water bridges: B:Q.69, B:K.103 Salt bridges: B:K.67, B:K.103

22 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: D.218, I.219, N.220, N.248 Ligand excluded by PLIP NA.3: 2 residues within 4Å: Chain A: P.10, E.195 Ligand excluded by PLIP NA.4: 3 residues within 4Å: Chain A: D.218, A.244, A.245 Ligand excluded by PLIP NA.5: 1 residues within 4Å: Chain A: R.259 Ligand excluded by PLIP NA.6: 4 residues within 4Å: Chain A: I.228, G.229, V.253, G.256 Ligand excluded by PLIP NA.7: 3 residues within 4Å: Chain A: D.106, T.110 Ligands: ACT.13 Ligand excluded by PLIP NA.8: 4 residues within 4Å: Chain A: R.174, D.176, R.178, T.183 Ligand excluded by PLIP NA.9: 3 residues within 4Å: Chain A: G.108, S.109, P.143 Ligand excluded by PLIP NA.10: 3 residues within 4Å: Chain A: T.161, S.162, G.206 Ligand excluded by PLIP NA.11: 2 residues within 4Å: Chain A: R.142, P.143 Ligand excluded by PLIP NA.12: 2 residues within 4Å: Chain A: E.276, A.280 Ligand excluded by PLIP NA.14: 4 residues within 4Å: Chain B: D.218, I.219, N.220, N.248 Ligand excluded by PLIP NA.15: 2 residues within 4Å: Chain B: P.10, E.195 Ligand excluded by PLIP NA.16: 3 residues within 4Å: Chain B: D.218, A.244, A.245 Ligand excluded by PLIP NA.17: 1 residues within 4Å: Chain B: R.259 Ligand excluded by PLIP NA.18: 4 residues within 4Å: Chain B: I.228, G.229, V.253, G.256 Ligand excluded by PLIP NA.19: 3 residues within 4Å: Chain B: D.106, T.110 Ligands: ACT.1 Ligand excluded by PLIP NA.20: 4 residues within 4Å: Chain B: R.174, D.176, R.178, T.183 Ligand excluded by PLIP NA.21: 3 residues within 4Å: Chain B: G.108, S.109, P.143 Ligand excluded by PLIP NA.22: 3 residues within 4Å: Chain B: T.161, S.162, G.206 Ligand excluded by PLIP NA.23: 2 residues within 4Å: Chain B: R.142, P.143 Ligand excluded by PLIP NA.24: 2 residues within 4Å: Chain B: E.276, A.280 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J. et al., Crystal structure of putative orotidine 5'-phosphate decarboxylase from Streptomyces avermitilis MA-4680. To be Published

Release Date

2010-01-19

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Orotidine 5'-phosphate decarboxylase