SMTL ID : 3l5h.1

Crystal structure of the full ectodomain of human gp130: New insights into the molecular assembly of receptor complexes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: H.203, N.204 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: I.59, N.60, T.62 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 1 residues within 4Å: Chain A: N.20 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- BMA: beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA-BMA.2: 1 residues within 4Å: Chain A: N.134 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-BMA.5: 5 residues within 4Å: Chain A: R.529, N.530, D.574, E.575, G.576 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.574

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.4: 3 residues within 4Å: Chain A: I.340, L.341, N.360 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.6: 2 residues within 4Å: Chain A: E.344, N.356 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.344

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 1 residues within 4Å: Chain A: R.120 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.120 SO4.9: 1 residues within 4Å: Chain A: R.275 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.275 SO4.10: 1 residues within 4Å: Chain A: R.372 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Crystal structure of the entire ectodomain of gp130: insights into the molecular assembly of the tall cytokine receptor complexes. J.Biol.Chem. (2010)

Release Date

2010-05-19

Peptides

Interleukin-6 receptor subunit beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-6 receptor subunit beta