SMTL ID : 3l6a.1

Crystal structure of the C-terminal region of Human p97

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain A: Q.130, E.133, V.166, N.167, K.170, M.171 Ligands: SO4.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.130, A:N.167 Salt bridges: A:E.133 MES.2: 7 residues within 4Å: Chain A: F.161, Q.162, L.194, F.195, P.196, L.197, L.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.195, A:L.197, A:L.198

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 3 residues within 4Å: Chain A: S.126, Q.163, S.164 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.130 PG4.4: 4 residues within 4Å: Chain A: S.134, T.136, H.137 Ligands: SO4.6 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.137, A:E.174

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: D.289, H.290, V.291, D.292, L.293 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.291, A:D.292, A:L.293

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 6 residues within 4Å: Chain A: C.96, P.97, E.100, K.107, H.137 Ligands: PG4.4 7 PLIP interactions: 7 interactions with chain A Water bridges: A:H.137, A:H.137, A:F.138, A:F.138, A:F.138 Salt bridges: A:K.107, A:H.137 SO4.7: 4 residues within 4Å: Chain A: K.165, N.167, K.170 Ligands: MES.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.167 Salt bridges: A:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., Crystal structure of the C-terminal region of human p97/DAP5. Proteins (2010)

Release Date

2010-04-28

Peptides

Eukaryotic translation initiation factor 4 gamma 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4 gamma 2