SMTL ID : 3l6j.4 (3 other biounits)

Structure of cinaciguat (bay 58-2667) bound to nostoc H-NOX domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x Z90: 4-({(4-carboxybutyl)[2-(2-{[4-(2-phenylethyl)benzyl]oxy}phenyl)ethyl]amino}methyl)benzoic acid(Non-covalent)

Z90.1: 23 residues within 4Å: Chain A: M.1, Y.2, V.5, G.39, W.74, Y.83, L.87, F.97, L.101, L.104, H.105, V.108, F.112, L.115, R.116, P.118, Y.134, S.136, R.138, L.141, M.144, L.148, L.152 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.2, A:V.5, A:Y.83, A:L.87, A:F.97, A:L.101, A:L.104, A:V.108, A:F.112, A:L.115, A:P.118, A:L.141, A:L.148, A:L.148, A:L.152 Hydrogen bonds: A:Y.2, A:R.116, A:S.136 Water bridges: A:Y.134, A:R.138 Salt bridges: A:R.138, A:R.138 pi-Stacking: A:W.74, A:W.74 Z90.2: 24 residues within 4Å: Chain B: M.1, Y.2, L.4, V.5, G.39, W.74, T.78, Y.83, F.97, L.101, L.104, H.105, V.108, F.112, L.115, R.116, P.118, Y.134, S.136, R.138, L.141, M.144, L.148, L.152 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:Y.2, B:V.5, B:W.74, B:T.78, B:Y.83, B:F.97, B:L.101, B:L.104, B:F.112, B:L.115, B:L.115, B:L.141, B:L.148, B:L.148, B:L.152 Hydrogen bonds: B:Y.2, B:R.116, B:Y.134 Water bridges: B:T.137, B:T.137, B:R.138, B:R.138 Salt bridges: B:R.138, B:R.138 pi-Stacking: B:W.74, B:W.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, F. et al., Structure of cinaciguat (BAY 58-2667) bound to Nostoc H-NOX domain reveals insights into heme-mimetic activation of the soluble guanylyl cyclase. J.Biol.Chem. (2010)

Release Date

2010-05-12

Peptides

Alr2278 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alr2278 protein

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