SMTL ID : 3l6p.1 (1 other biounit)

Crystal Structure of Dengue Virus 1 NS2B/NS3 protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: G.25, H.28 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.28 NI.2: 3 residues within 4Å: Chain A: H.101, S.185, N.202 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.101 NI.3: 1 residues within 4Å: Chain A: H.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.3 NI.6: 2 residues within 4Å: Chain B: G.25, H.28 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.28 NI.7: 3 residues within 4Å: Chain B: H.101, S.185, N.202 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.101 NI.8: 1 residues within 4Å: Chain B: H.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.3

2 x CD: CADMIUM ION(Non-covalent)

CD.4: 3 residues within 4Å: Chain A: H.23, H.28, E.144 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.23, A:H.28, A:E.144, A:E.144, H2O.1 CD.9: 3 residues within 4Å: Chain B: H.23, H.28, E.144 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.23, B:H.28, B:E.144, B:E.144, H2O.2

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: E.18, P.156, K.157, N.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.156, A:N.158, A:N.158 Water bridges: A:E.18 SO4.10: 4 residues within 4Å: Chain B: E.18, P.156, K.157, N.158 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.156, B:N.158, B:N.158 Water bridges: B:E.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandramouli, S. et al., Serotype-specific structural differences in the protease-cofactor complexes of the dengue virus family. J.Virol. (2010)

Release Date

2010-03-02

Peptides

fusion protein of nonstructural protein 2B and nonstructural protein 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

fusion protein of nonstructural protein 2B and nonstructural protein 3

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