SMTL ID : 3l7m.1 (2 other biounits)

Structure of the Wall Teichoic Acid Polymerase TagF, H548A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: K.327, R.333 Chain B: R.320 Ligands: EDT.9 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.324 Salt bridges: B:R.320, A:K.327, A:R.333 PO4.2: 4 residues within 4Å: Chain A: K.449, T.546, S.624, S.625 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.625, A:S.625 PO4.10: 5 residues within 4Å: Chain A: R.320, R.324 Chain B: K.327, R.333 Ligands: EDT.9 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:K.327, B:R.333, A:R.320 Hydrogen bonds: A:R.324 PO4.11: 5 residues within 4Å: Chain B: K.449, T.546, Y.623, S.624, S.625 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.625, B:S.625 PO4.18: 4 residues within 4Å: Chain C: K.327, R.333 Chain D: R.320 Ligands: EDT.27 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Salt bridges: D:R.320, C:K.327, C:R.333 PO4.19: 5 residues within 4Å: Chain C: K.449, T.546, Y.623, S.624, S.625 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.625 PO4.22: 4 residues within 4Å: Chain C: R.320 Chain D: K.327, R.333 Ligands: EDT.27 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Salt bridges: C:R.320, D:K.327, D:R.333 PO4.23: 4 residues within 4Å: Chain D: K.449, T.546, S.624, S.625 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.624, D:S.625

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: K.351, K.353 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: A.425, R.426, W.443 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: W.443, H.444, G.445 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: R.324, N.328 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: K.433, R.478 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: E.561, L.562, L.566, L.591 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain B: Q.318, F.319, T.322 Chain D: Q.318, F.319, T.322 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: K.351, P.352, K.353 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: N.391, P.392, D.393 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: E.561, L.562, L.566 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain B: N.395, V.396, V.397, K.403 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain B: W.443, G.445 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain C: K.351, P.352, K.353 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain A: K.315, V.316 Chain C: A.313 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain D: K.351, P.352, K.353 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain D: N.391, P.392, D.393 Ligand excluded by PLIP CL.26: 1 residues within 4Å: Chain D: R.582 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain D: R.474, S.477 Ligand excluded by PLIP

2 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.9: 7 residues within 4Å: Chain A: L.323, R.324, K.327 Chain B: R.324, K.327 Ligands: PO4.1, PO4.10 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:K.327, B:K.327 Salt bridges: A:R.324, A:R.324, A:K.327, A:K.327, A:K.327, B:R.324, B:K.327, B:K.327, B:K.327 EDT.27: 8 residues within 4Å: Chain C: R.320, R.324, K.327 Chain D: L.323, R.324, K.327 Ligands: PO4.18, PO4.22 11 PLIP interactions: 5 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:R.324, D:K.327, C:K.327 Salt bridges: D:R.324, D:K.327, D:K.327, C:R.324, C:R.324, C:K.327, C:K.327, C:K.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-04-28

Peptides

Teichoic acid biosynthesis protein F: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Teichoic acid biosynthesis protein F

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