SMTL ID : 3l81.1

Crystal structure of adaptor protein complex 4 (AP-4) mu4 subunit C-terminal domain, in complex with a sorting peptide from the amyloid precursor protein (APP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x THR- TYR- LYS- PHE- PHE- GLU- GLN: Amyloid beta A4 protein(Non-covalent)

THR-TYR-LYS-PHE-PHE-GLU-GLN.1: 10 residues within 4Å: Chain A: S.102, F.103, H.104, S.105, V.107, L.109, F.112, E.113, T.128, R.131 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.103, A:F.103, A:H.104, A:L.109, A:L.109, A:F.112, A:R.131 Hydrogen bonds: A:F.103, A:F.103, A:S.105, A:S.105, A:E.113 Water bridges: A:E.113, A:T.128 Salt bridges: A:R.131 pi-Cation interactions: A:R.131

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: P.231, G.232, P.233, P.234 No protein-ligand interaction detected (PLIP) GOL.3: 7 residues within 4Å: Chain A: R.42, S.256, F.257, E.258, H.293, S.294, D.295 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.42, A:F.257, A:E.258, A:S.294 GOL.4: 2 residues within 4Å: Chain A: E.88, L.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.88, A:E.88 Water bridges: A:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burgos, P.V. et al., Sorting of the Alzheimer's disease amyloid precursor protein mediated by the AP-4 complex. Dev.Cell (2010)

Release Date

2010-06-02

Peptides

AP-4 complex subunit mu-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP-4 complex subunit mu-1