- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: T.12, R.20, K.24
6 PLIP interactions:6 interactions with chain A- Water bridges: A:S.11, A:R.20, A:R.20, A:R.20, A:Y.132
- Salt bridges: A:R.20
SO4.4: 6 residues within 4Å:- Chain B: Q.60, E.61, F.62
- Chain C: R.33, H.34, R.37
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:H.34, B:E.61, B:F.62
- Water bridges: C:H.31, C:R.33, B:E.61
- Salt bridges: C:R.33, C:R.37
SO4.5: 3 residues within 4Å:- Chain B: T.12, R.20, K.24
6 PLIP interactions:6 interactions with chain B- Water bridges: B:R.20, B:R.20, B:R.20, B:R.20, B:Y.132
- Salt bridges: B:R.20
SO4.6: 5 residues within 4Å:- Chain B: H.31, R.33, H.34, R.37
- Chain C: Q.60
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.34, B:R.37, B:R.37
SO4.7: 7 residues within 4Å:- Chain B: K.45, T.50, R.81, S.83, F.84
- Chain C: Q.56, S.77
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:T.50, B:T.50, B:F.84, C:Q.56, C:S.77
- Salt bridges: B:K.45, B:R.81
SO4.9: 3 residues within 4Å:- Chain C: T.12, R.20, K.24
5 PLIP interactions:5 interactions with chain C- Water bridges: C:S.11, C:R.20, C:R.20, C:R.20
- Salt bridges: C:R.20
SO4.11: 6 residues within 4Å:- Chain A: R.33, H.34, R.37
- Chain D: Q.60, E.61, F.62
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:H.34, D:E.61, D:F.62
- Water bridges: A:H.31, A:R.33, D:E.61
- Salt bridges: A:R.33, A:R.37
SO4.12: 3 residues within 4Å:- Chain D: T.12, R.20, K.24
5 PLIP interactions:5 interactions with chain D- Water bridges: D:R.20, D:R.20, D:R.20, D:R.20
- Salt bridges: D:R.20
SO4.13: 5 residues within 4Å:- Chain A: Q.60
- Chain D: H.31, R.33, H.34, R.37
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.34, D:R.37, D:R.37
SO4.14: 7 residues within 4Å:- Chain A: Q.56, S.77
- Chain D: K.45, T.50, R.81, S.83, F.84
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:T.50, D:F.84, A:Q.56, A:S.77
- Salt bridges: D:K.45, D:R.81
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vaithiyalingam, S. et al., Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-07-14
- Peptides
- DNA primase large subunit: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vaithiyalingam, S. et al., Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase. Proc.Natl.Acad.Sci.USA (2010)
- Release Date
- 2010-07-14
- Peptides
- DNA primase large subunit: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B