SMTL ID : 3lac.2 (1 other biounit)

Crystal structure of Bacillus anthracis pyrrolidone-carboxylate peptidase, pcP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

18 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain D: P.179, Q.181 Ligands: PEG.19, PEG.20 Ligand excluded by PLIP PEG.2: 2 residues within 4Å: Chain A: P.11, Q.41 Ligand excluded by PLIP PEG.3: 6 residues within 4Å: Chain A: D.88, A.89, R.90, I.91, T.140, F.141 Ligand excluded by PLIP PEG.4: 4 residues within 4Å: Chain A: K.119, V.122, K.123, V.134 Ligand excluded by PLIP PEG.7: 4 residues within 4Å: Chain B: V.52, E.55, Y.56, E.59 Ligand excluded by PLIP PEG.8: 4 residues within 4Å: Chain B: G.72, G.73, Q.181 Ligands: PEG.12 Ligand excluded by PLIP PEG.9: 6 residues within 4Å: Chain C: G.72, R.90, F.170, Y.178, Q.181 Ligands: PEG.12 Ligand excluded by PLIP PEG.10: 7 residues within 4Å: Chain B: F.9, N.18, P.19, A.20, G.69, Q.70, C.143 Ligand excluded by PLIP PEG.11: 2 residues within 4Å: Chain B: E.95, G.96 Ligand excluded by PLIP PEG.12: 4 residues within 4Å: Chain B: P.179, Q.181 Ligands: PEG.8, PEG.9 Ligand excluded by PLIP PEG.13: 2 residues within 4Å: Chain C: P.11, Q.41 Ligand excluded by PLIP PEG.14: 6 residues within 4Å: Chain C: D.88, A.89, R.90, I.91, T.140, F.141 Ligand excluded by PLIP PEG.15: 4 residues within 4Å: Chain C: K.119, V.122, K.123, V.134 Ligand excluded by PLIP PEG.18: 4 residues within 4Å: Chain D: V.52, E.55, Y.56, E.59 Ligand excluded by PLIP PEG.19: 4 residues within 4Å: Chain D: G.72, G.73, Q.181 Ligands: PEG.1 Ligand excluded by PLIP PEG.20: 6 residues within 4Å: Chain A: G.72, R.90, F.170, Y.178, Q.181 Ligands: PEG.1 Ligand excluded by PLIP PEG.21: 7 residues within 4Å: Chain D: F.9, N.18, P.19, A.20, G.69, Q.70, C.143 Ligand excluded by PLIP PEG.22: 2 residues within 4Å: Chain D: E.95, G.96 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain B: S.133, V.134 No protein-ligand interaction detected (PLIP) MG.6: 6 residues within 4Å: Chain B: P.75, P.182, S.183 Chain D: P.182, S.183 Ligands: MG.17 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:P.75, B:S.183 MG.16: 2 residues within 4Å: Chain D: S.133, V.134 No protein-ligand interaction detected (PLIP) MG.17: 6 residues within 4Å: Chain B: P.182, S.183 Chain D: P.75, P.182, S.183 Ligands: MG.6 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:P.75, D:S.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, S.M. et al., Crystal structure of Bacillus anthracis pyrrolidone-carboxylate peptidase, pcP. To be Published

Release Date

2010-01-19

Peptides

Pyrrolidone-carboxylate peptidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Pyrrolidone-carboxylate peptidase

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