SMTL ID : 3law.5 (4 other biounits)

Structure of GTP-bound L129F mutant Rab7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: T.22, T.40, D.63, T.64 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.22, A:T.40

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, F.33, S.34, N.35, Y.37, K.38, T.40, T.64, A.65, G.66, N.125, K.126, D.128, F.129, S.155, A.156, K.157 Ligands: MG.1 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.18, A:V.19, A:G.20, A:K.21, A:K.21, A:K.21, A:T.22, A:T.22, A:T.22, A:S.23, A:S.23, A:S.34, A:Y.37, A:T.40, A:T.64, A:G.66, A:N.125, A:K.126, A:K.126, A:A.156, A:K.157 Salt bridges: A:D.128 pi-Stacking: A:F.33, A:F.33 pi-Cation interactions: A:K.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCray, B.A. et al., Disease mutations in Rab7 result in unregulated nucleotide exchange and inappropriate activation. Hum.Mol.Genet. (2010)

Release Date

2010-01-26

Peptides

Ras-related protein Rab-7a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Ras-related protein Rab-7a

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