SMTL ID : 3lcd.1

Inhibitor Bound to A DFG-In structure of the Kinase Domain of CSF-1R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Y.134, N.195, G.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.134, A:N.195, A:G.196 SO4.2: 7 residues within 4Å: Chain A: R.184, R.208, Y.216, V.218, K.219, G.220, A.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.219, A:G.220 Salt bridges: A:R.184, A:R.208

1 x BDY: N~3~-(2,6-dichlorobenzyl)-5-(4-{[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]carbonyl}phenyl)pyrazine-2,3-diamine(Non-covalent)

BDY.3: 15 residues within 4Å: Chain A: L.54, G.55, V.62, A.80, T.129, E.130, Y.131, C.132, C.133, Y.134, G.135, R.189, N.190, L.192, D.203 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.54, A:Y.131, A:L.192 Hydrogen bonds: A:T.129, A:E.130, A:C.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyers, M.J. et al., Structure-based drug design enables conversion of a DFG-in binding CSF-1R kinase inhibitor to a DFG-out binding mode. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-03-02

Peptides

Macrophage colony-stimulating factor 1 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor