SMTL ID : 3lcn.3 (3 other biounits)

Nab2:Gfd1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-4-4-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.76, Q.80 Chain B: E.76, Q.80 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:E.76, A:E.76, B:E.76 ZN.2: 6 residues within 4Å: Chain A: E.46, D.50, R.61 Chain B: R.61, D.62 Chain F: D.57 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain F, 1 interactions with chain B Metal complexes: A:E.46, A:D.50, A:D.50, F:D.57, B:D.62 ZN.3: 5 residues within 4Å: Chain A: R.61, D.62 Chain B: E.46, D.50, R.61 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.46, B:D.50, B:D.50, A:D.62, H2O.3 ZN.4: 4 residues within 4Å: Chain E: E.76, Q.80 Chain F: E.76, Q.80 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Metal complexes: E:E.76, E:E.76, F:E.76 ZN.5: 6 residues within 4Å: Chain B: D.57 Chain E: E.46, D.50, R.61 Chain F: R.61, D.62 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain B, 1 interactions with chain F Metal complexes: E:E.46, E:D.50, E:D.50, B:D.57, F:D.62 ZN.6: 5 residues within 4Å: Chain E: R.61, D.62 Chain F: E.46, D.50, R.61 5 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: F:E.46, F:D.50, F:D.50, E:D.62, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, C. et al., Structural basis for the function of the Saccharomyces cerevisiae Gfd1 protein in mRNA nuclear export. J.Biol.Chem. (2010)

Release Date

2010-05-12

Peptides

Nuclear polyadenylated RNA-binding protein NAB2: ABEF
mRNA transport factor GFD1: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

C
C

D
D

G
C

H
D

Nuclear polyadenylated RNA-binding protein NAB2

mRNA transport factor GFD1

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