SMTL ID : 3ld9.1

Crystal structure of thymidylate kinase from Ehrlichia chaffeensis at 2.15A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: I.29, D.30, G.31, S.32, G.33, K.34, T.35 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.31, A:S.32, A:G.33, A:K.34, A:T.35, A:T.35 Water bridges: A:G.33 Salt bridges: A:K.34 SO4.2: 7 residues within 4Å: Chain B: I.29, D.30, G.31, S.32, G.33, K.34, T.35 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.31, B:S.32, B:G.33, B:K.34, B:T.35, B:T.35 Water bridges: B:G.33, B:K.34, B:T.36 Salt bridges: B:K.34 SO4.4: 7 residues within 4Å: Chain C: I.29, D.30, G.31, S.32, G.33, K.34, T.35 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.31, C:S.32, C:G.33, C:K.34, C:T.35 Salt bridges: C:K.34 SO4.5: 7 residues within 4Å: Chain D: I.29, D.30, G.31, S.32, G.33, K.34, T.35 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:G.31, D:S.32, D:G.33, D:K.34, D:T.35 Water bridges: D:G.33, D:T.35, D:T.35, D:T.36, D:R.114 Salt bridges: D:K.34

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain B: E.59, P.60, F.88, R.92, R.114, F.115, S.118, T.119, Q.123 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.59, B:R.92, B:R.114, B:Q.123 EDO.6: 8 residues within 4Å: Chain D: E.59, P.60, F.88, R.92, R.114, F.115, T.119, Q.123 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.92, D:R.114, D:T.119, D:Q.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leibly, D.J. et al., Structure of thymidylate kinase from Ehrlichia chaffeensis. Acta Crystallogr.,Sect.F (2011)

Release Date

2010-02-16

Peptides

Thymidylate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Thymidylate kinase