SMTL ID : 3le7.1 (1 other biounit)

Crystal structure of PD-L1 from P. dioica in complex with adenine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 1 residues within 4Å: Chain A: N.10 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.10, A:N.10, A:N.10, A:K.15 NAG.2: 8 residues within 4Å: Chain A: N.69, N.70, Y.72, E.204, E.205, W.207, G.208, N.252 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.69, A:N.70, A:Y.72, A:Y.72, A:E.205, A:W.207, A:G.208, A:N.252

1 x ADE: ADENINE(Non-covalent)

ADE.3: 10 residues within 4Å: Chain A: L.71, Y.72, V.73, F.89, S.120, Y.122, I.170, S.174, E.175, R.178 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:V.73, A:V.73, A:S.120, A:S.174, A:E.175, A:R.178, A:R.178 Water bridges: A:Y.72 pi-Stacking: A:Y.72, A:Y.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Severino, V. et al., The role of the glycan moiety on the structure-function relationships of PD-L1, type 1 ribosome-inactivating protein from P. dioica leaves. Mol Biosyst (2010)

Release Date

2010-04-14

Peptides

Ribosome-inactivating protein PD-L1/PD-L2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome-inactivating protein PD-L1/PD-L2

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