SMTL ID : 3lec.2 (1 other biounit)

The Crystal Structure of a protein in the NADB-Rossmann Superfamily from Streptococcus agalactiae to 1.8A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.140, H.165 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.140, A:D.140, A:H.165, H2O.5 ZN.5: 2 residues within 4Å: Chain B: D.140, H.165 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.140, B:D.140, B:H.165, H2O.9

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: M.99, G.100, N.126, N.127 Chain B: K.197 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.100, A:N.126, A:N.127 Salt bridges: B:K.197 SO4.3: 4 residues within 4Å: Chain A: K.154, R.155, K.190, N.193 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.155, A:N.193 Water bridges: A:E.194, A:E.194 Salt bridges: A:R.155, A:K.197 SO4.4: 2 residues within 4Å: Chain A: K.10, T.150 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.10 SO4.6: 5 residues within 4Å: Chain A: K.197 Chain B: M.99, G.100, N.126, N.127 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.100, B:N.126, B:N.127 Salt bridges: A:K.197 SO4.7: 4 residues within 4Å: Chain B: K.154, R.155, K.190, N.193 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.155, B:N.193 Water bridges: B:R.155, B:K.197 Salt bridges: B:R.155, B:K.197 SO4.8: 2 residues within 4Å: Chain B: K.10, T.150 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stein, A.J. et al., The Crystal Structure of a protein in the NADB-Rossmann Superfamily from Streptococcus agalactiae to 1.8A. To be Published

Release Date

2010-01-26

Peptides

NADB-Rossmann Superfamily protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NADB-Rossmann Superfamily protein

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