SMTL ID : 3leo.1 (1 other biounit)

Structure of human Leukotriene C4 synthase mutant R31Q in complex with glutathione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-12-mer

Ligands

24 x PAM: PALMITOLEIC ACID(Non-covalent)

PAM.1: 7 residues within 4Å: Chain A: E.9, W.73, I.77 Chain I: L.69, W.73 Ligands: PAM.61, PAM.121 Ligand excluded by PLIP PAM.15: 8 residues within 4Å: Chain A: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.63 Ligand excluded by PLIP PAM.16: 7 residues within 4Å: Chain B: E.9, W.73, I.77 Chain K: L.69, W.73 Ligands: PAM.106, PAM.151 Ligand excluded by PLIP PAM.30: 8 residues within 4Å: Chain B: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.108 Ligand excluded by PLIP PAM.31: 7 residues within 4Å: Chain C: E.9, W.73, I.77 Chain L: L.69, W.73 Ligands: PAM.76, PAM.166 Ligand excluded by PLIP PAM.45: 8 residues within 4Å: Chain C: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.78 Ligand excluded by PLIP PAM.46: 7 residues within 4Å: Chain D: E.9, W.73, I.77 Chain J: L.69, W.73 Ligands: PAM.91, PAM.136 Ligand excluded by PLIP PAM.60: 8 residues within 4Å: Chain D: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.93 Ligand excluded by PLIP PAM.61: 7 residues within 4Å: Chain A: L.69, W.73 Chain E: E.9, W.73, I.77 Ligands: PAM.1, PAM.121 Ligand excluded by PLIP PAM.75: 8 residues within 4Å: Chain E: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.123 Ligand excluded by PLIP PAM.76: 7 residues within 4Å: Chain C: L.69, W.73 Chain F: E.9, W.73, I.77 Ligands: PAM.31, PAM.166 Ligand excluded by PLIP PAM.90: 8 residues within 4Å: Chain F: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.168 Ligand excluded by PLIP PAM.91: 7 residues within 4Å: Chain D: L.69, W.73 Chain G: E.9, W.73, I.77 Ligands: PAM.46, PAM.136 Ligand excluded by PLIP PAM.105: 8 residues within 4Å: Chain G: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.138 Ligand excluded by PLIP PAM.106: 7 residues within 4Å: Chain B: L.69, W.73 Chain H: E.9, W.73, I.77 Ligands: PAM.16, PAM.151 Ligand excluded by PLIP PAM.120: 8 residues within 4Å: Chain H: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.153 Ligand excluded by PLIP PAM.121: 7 residues within 4Å: Chain E: L.69, W.73 Chain I: E.9, W.73, I.77 Ligands: PAM.1, PAM.61 Ligand excluded by PLIP PAM.135: 8 residues within 4Å: Chain I: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.3 Ligand excluded by PLIP PAM.136: 7 residues within 4Å: Chain G: L.69, W.73 Chain J: E.9, W.73, I.77 Ligands: PAM.46, PAM.91 Ligand excluded by PLIP PAM.150: 8 residues within 4Å: Chain J: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.48 Ligand excluded by PLIP PAM.151: 7 residues within 4Å: Chain H: L.69, W.73 Chain K: E.9, W.73, I.77 Ligands: PAM.16, PAM.106 Ligand excluded by PLIP PAM.165: 8 residues within 4Å: Chain K: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.18 Ligand excluded by PLIP PAM.166: 7 residues within 4Å: Chain F: L.69, W.73 Chain L: E.9, W.73, I.77 Ligands: PAM.31, PAM.76 Ligand excluded by PLIP PAM.180: 8 residues within 4Å: Chain L: L.12, A.15, V.16, L.19, G.82, L.86, L.89 Ligands: PLM.33 Ligand excluded by PLIP

72 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 3 residues within 4Å: Chain A: P.137, L.140, R.141 Ligand excluded by PLIP PLM.3: 5 residues within 4Å: Chain A: L.131, F.135 Chain I: L.12 Ligands: PLM.6, PAM.135 Ligand excluded by PLIP PLM.4: 3 residues within 4Å: Chain A: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.6: 2 residues within 4Å: Chain A: A.139 Ligands: PLM.3 Ligand excluded by PLIP PLM.7: 2 residues within 4Å: Chain A: W.121, A.125 Ligand excluded by PLIP PLM.8: 4 residues within 4Å: Chain A: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.17: 3 residues within 4Å: Chain B: P.137, L.140, R.141 Ligand excluded by PLIP PLM.18: 5 residues within 4Å: Chain B: L.131, F.135 Chain K: L.12 Ligands: PLM.21, PAM.165 Ligand excluded by PLIP PLM.19: 3 residues within 4Å: Chain B: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.21: 2 residues within 4Å: Chain B: A.139 Ligands: PLM.18 Ligand excluded by PLIP PLM.22: 2 residues within 4Å: Chain B: W.121, A.125 Ligand excluded by PLIP PLM.23: 4 residues within 4Å: Chain B: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.32: 3 residues within 4Å: Chain C: P.137, L.140, R.141 Ligand excluded by PLIP PLM.33: 5 residues within 4Å: Chain C: L.131, F.135 Chain L: L.12 Ligands: PLM.36, PAM.180 Ligand excluded by PLIP PLM.34: 3 residues within 4Å: Chain C: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.36: 2 residues within 4Å: Chain C: A.139 Ligands: PLM.33 Ligand excluded by PLIP PLM.37: 2 residues within 4Å: Chain C: W.121, A.125 Ligand excluded by PLIP PLM.38: 4 residues within 4Å: Chain C: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.47: 3 residues within 4Å: Chain D: P.137, L.140, R.141 Ligand excluded by PLIP PLM.48: 5 residues within 4Å: Chain D: L.131, F.135 Chain J: L.12 Ligands: PLM.51, PAM.150 Ligand excluded by PLIP PLM.49: 3 residues within 4Å: Chain D: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.51: 2 residues within 4Å: Chain D: A.139 Ligands: PLM.48 Ligand excluded by PLIP PLM.52: 2 residues within 4Å: Chain D: W.121, A.125 Ligand excluded by PLIP PLM.53: 4 residues within 4Å: Chain D: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.62: 3 residues within 4Å: Chain E: P.137, L.140, R.141 Ligand excluded by PLIP PLM.63: 5 residues within 4Å: Chain A: L.12 Chain E: L.131, F.135 Ligands: PAM.15, PLM.66 Ligand excluded by PLIP PLM.64: 3 residues within 4Å: Chain E: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.66: 2 residues within 4Å: Chain E: A.139 Ligands: PLM.63 Ligand excluded by PLIP PLM.67: 2 residues within 4Å: Chain E: W.121, A.125 Ligand excluded by PLIP PLM.68: 4 residues within 4Å: Chain E: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.77: 3 residues within 4Å: Chain F: P.137, L.140, R.141 Ligand excluded by PLIP PLM.78: 5 residues within 4Å: Chain C: L.12 Chain F: L.131, F.135 Ligands: PAM.45, PLM.81 Ligand excluded by PLIP PLM.79: 3 residues within 4Å: Chain F: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.81: 2 residues within 4Å: Chain F: A.139 Ligands: PLM.78 Ligand excluded by PLIP PLM.82: 2 residues within 4Å: Chain F: W.121, A.125 Ligand excluded by PLIP PLM.83: 4 residues within 4Å: Chain F: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.92: 3 residues within 4Å: Chain G: P.137, L.140, R.141 Ligand excluded by PLIP PLM.93: 5 residues within 4Å: Chain D: L.12 Chain G: L.131, F.135 Ligands: PAM.60, PLM.96 Ligand excluded by PLIP PLM.94: 3 residues within 4Å: Chain G: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.96: 2 residues within 4Å: Chain G: A.139 Ligands: PLM.93 Ligand excluded by PLIP PLM.97: 2 residues within 4Å: Chain G: W.121, A.125 Ligand excluded by PLIP PLM.98: 4 residues within 4Å: Chain G: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.107: 3 residues within 4Å: Chain H: P.137, L.140, R.141 Ligand excluded by PLIP PLM.108: 5 residues within 4Å: Chain B: L.12 Chain H: L.131, F.135 Ligands: PAM.30, PLM.111 Ligand excluded by PLIP PLM.109: 3 residues within 4Å: Chain H: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.111: 2 residues within 4Å: Chain H: A.139 Ligands: PLM.108 Ligand excluded by PLIP PLM.112: 2 residues within 4Å: Chain H: W.121, A.125 Ligand excluded by PLIP PLM.113: 4 residues within 4Å: Chain H: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.122: 3 residues within 4Å: Chain I: P.137, L.140, R.141 Ligand excluded by PLIP PLM.123: 5 residues within 4Å: Chain E: L.12 Chain I: L.131, F.135 Ligands: PAM.75, PLM.126 Ligand excluded by PLIP PLM.124: 3 residues within 4Å: Chain I: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.126: 2 residues within 4Å: Chain I: A.139 Ligands: PLM.123 Ligand excluded by PLIP PLM.127: 2 residues within 4Å: Chain I: W.121, A.125 Ligand excluded by PLIP PLM.128: 4 residues within 4Å: Chain I: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.137: 3 residues within 4Å: Chain J: P.137, L.140, R.141 Ligand excluded by PLIP PLM.138: 5 residues within 4Å: Chain G: L.12 Chain J: L.131, F.135 Ligands: PAM.105, PLM.141 Ligand excluded by PLIP PLM.139: 3 residues within 4Å: Chain J: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.141: 2 residues within 4Å: Chain J: A.139 Ligands: PLM.138 Ligand excluded by PLIP PLM.142: 2 residues within 4Å: Chain J: W.121, A.125 Ligand excluded by PLIP PLM.143: 4 residues within 4Å: Chain J: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.152: 3 residues within 4Å: Chain K: P.137, L.140, R.141 Ligand excluded by PLIP PLM.153: 5 residues within 4Å: Chain H: L.12 Chain K: L.131, F.135 Ligands: PAM.120, PLM.156 Ligand excluded by PLIP PLM.154: 3 residues within 4Å: Chain K: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.156: 2 residues within 4Å: Chain K: A.139 Ligands: PLM.153 Ligand excluded by PLIP PLM.157: 2 residues within 4Å: Chain K: W.121, A.125 Ligand excluded by PLIP PLM.158: 4 residues within 4Å: Chain K: L.19, L.89, F.93, L.96 Ligand excluded by PLIP PLM.167: 3 residues within 4Å: Chain L: P.137, L.140, R.141 Ligand excluded by PLIP PLM.168: 5 residues within 4Å: Chain F: L.12 Chain L: L.131, F.135 Ligands: PAM.90, PLM.171 Ligand excluded by PLIP PLM.169: 3 residues within 4Å: Chain L: L.23, Y.26, Q.100 Ligand excluded by PLIP PLM.171: 2 residues within 4Å: Chain L: A.139 Ligands: PLM.168 Ligand excluded by PLIP PLM.172: 2 residues within 4Å: Chain L: W.121, A.125 Ligand excluded by PLIP PLM.173: 4 residues within 4Å: Chain L: L.19, L.89, F.93, L.96 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 8 residues within 4Å: Chain A: S.105, A.106, Q.107 Chain B: R.53, S.105, A.106, Q.107 Ligands: SO4.20 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain A: R.39 Chain F: R.39 Chain K: R.39 Ligands: SO4.84, SO4.159 Ligand excluded by PLIP SO4.20: 8 residues within 4Å: Chain A: R.53, S.105, A.106, Q.107 Chain B: S.105, A.106, Q.107 Ligands: SO4.5 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain B: R.39 Chain G: R.39 Chain I: R.39 Ligands: SO4.99, SO4.129 Ligand excluded by PLIP SO4.35: 8 residues within 4Å: Chain C: S.105, A.106, Q.107 Chain D: R.53, S.105, A.106, Q.107 Ligands: SO4.50 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain C: R.39 Chain E: R.39 Chain J: R.39 Ligands: SO4.69, SO4.144 Ligand excluded by PLIP SO4.50: 8 residues within 4Å: Chain C: R.53, S.105, A.106, Q.107 Chain D: S.105, A.106, Q.107 Ligands: SO4.35 Ligand excluded by PLIP SO4.54: 5 residues within 4Å: Chain D: R.39 Chain H: R.39 Chain L: R.39 Ligands: SO4.114, SO4.174 Ligand excluded by PLIP SO4.65: 8 residues within 4Å: Chain E: S.105, A.106, Q.107 Chain F: R.53, S.105, A.106, Q.107 Ligands: SO4.80 Ligand excluded by PLIP SO4.69: 5 residues within 4Å: Chain C: R.39 Chain E: R.39 Chain J: R.39 Ligands: SO4.39, SO4.144 Ligand excluded by PLIP SO4.80: 8 residues within 4Å: Chain E: R.53, S.105, A.106, Q.107 Chain F: S.105, A.106, Q.107 Ligands: SO4.65 Ligand excluded by PLIP SO4.84: 5 residues within 4Å: Chain A: R.39 Chain F: R.39 Chain K: R.39 Ligands: SO4.9, SO4.159 Ligand excluded by PLIP SO4.95: 8 residues within 4Å: Chain G: S.105, A.106, Q.107 Chain H: R.53, S.105, A.106, Q.107 Ligands: SO4.110 Ligand excluded by PLIP SO4.99: 5 residues within 4Å: Chain B: R.39 Chain G: R.39 Chain I: R.39 Ligands: SO4.24, SO4.129 Ligand excluded by PLIP SO4.110: 8 residues within 4Å: Chain G: R.53, S.105, A.106, Q.107 Chain H: S.105, A.106, Q.107 Ligands: SO4.95 Ligand excluded by PLIP SO4.114: 5 residues within 4Å: Chain D: R.39 Chain H: R.39 Chain L: R.39 Ligands: SO4.54, SO4.174 Ligand excluded by PLIP SO4.125: 8 residues within 4Å: Chain I: S.105, A.106, Q.107 Chain J: R.53, S.105, A.106, Q.107 Ligands: SO4.140 Ligand excluded by PLIP SO4.129: 5 residues within 4Å: Chain B: R.39 Chain G: R.39 Chain I: R.39 Ligands: SO4.24, SO4.99 Ligand excluded by PLIP SO4.140: 8 residues within 4Å: Chain I: R.53, S.105, A.106, Q.107 Chain J: S.105, A.106, Q.107 Ligands: SO4.125 Ligand excluded by PLIP SO4.144: 5 residues within 4Å: Chain C: R.39 Chain E: R.39 Chain J: R.39 Ligands: SO4.39, SO4.69 Ligand excluded by PLIP SO4.155: 8 residues within 4Å: Chain K: S.105, A.106, Q.107 Chain L: R.53, S.105, A.106, Q.107 Ligands: SO4.170 Ligand excluded by PLIP SO4.159: 5 residues within 4Å: Chain A: R.39 Chain F: R.39 Chain K: R.39 Ligands: SO4.9, SO4.84 Ligand excluded by PLIP SO4.170: 8 residues within 4Å: Chain K: R.53, S.105, A.106, Q.107 Chain L: S.105, A.106, Q.107 Ligands: SO4.155 Ligand excluded by PLIP SO4.174: 5 residues within 4Å: Chain D: R.39 Chain H: R.39 Chain L: R.39 Ligands: SO4.54, SO4.114 Ligand excluded by PLIP

24 x NI: NICKEL (II) ION(Non-covalent)

NI.10: 8 residues within 4Å: Chain A: H.4, H.6 Chain E: H.4, H.6 Chain I: H.4, H.6 Ligands: NI.70, NI.130 Ligand excluded by PLIP NI.11: 2 residues within 4Å: Chain A: H.1, H.3 Ligand excluded by PLIP NI.25: 8 residues within 4Å: Chain B: H.4, H.6 Chain H: H.4, H.6 Chain K: H.4, H.6 Ligands: NI.115, NI.160 Ligand excluded by PLIP NI.26: 2 residues within 4Å: Chain B: H.1, H.3 Ligand excluded by PLIP NI.40: 8 residues within 4Å: Chain C: H.4, H.6 Chain F: H.4, H.6 Chain L: H.4, H.6 Ligands: NI.85, NI.175 Ligand excluded by PLIP NI.41: 2 residues within 4Å: Chain C: H.1, H.3 Ligand excluded by PLIP NI.55: 8 residues within 4Å: Chain D: H.4, H.6 Chain G: H.4, H.6 Chain J: H.4, H.6 Ligands: NI.100, NI.145 Ligand excluded by PLIP NI.56: 2 residues within 4Å: Chain D: H.1, H.3 Ligand excluded by PLIP NI.70: 8 residues within 4Å: Chain A: H.4, H.6 Chain E: H.4, H.6 Chain I: H.4, H.6 Ligands: NI.10, NI.130 Ligand excluded by PLIP NI.71: 2 residues within 4Å: Chain E: H.1, H.3 Ligand excluded by PLIP NI.85: 8 residues within 4Å: Chain C: H.4, H.6 Chain F: H.4, H.6 Chain L: H.4, H.6 Ligands: NI.40, NI.175 Ligand excluded by PLIP NI.86: 2 residues within 4Å: Chain F: H.1, H.3 Ligand excluded by PLIP NI.100: 8 residues within 4Å: Chain D: H.4, H.6 Chain G: H.4, H.6 Chain J: H.4, H.6 Ligands: NI.55, NI.145 Ligand excluded by PLIP NI.101: 2 residues within 4Å: Chain G: H.1, H.3 Ligand excluded by PLIP NI.115: 8 residues within 4Å: Chain B: H.4, H.6 Chain H: H.4, H.6 Chain K: H.4, H.6 Ligands: NI.25, NI.160 Ligand excluded by PLIP NI.116: 2 residues within 4Å: Chain H: H.1, H.3 Ligand excluded by PLIP NI.130: 8 residues within 4Å: Chain A: H.4, H.6 Chain E: H.4, H.6 Chain I: H.4, H.6 Ligands: NI.10, NI.70 Ligand excluded by PLIP NI.131: 2 residues within 4Å: Chain I: H.1, H.3 Ligand excluded by PLIP NI.145: 8 residues within 4Å: Chain D: H.4, H.6 Chain G: H.4, H.6 Chain J: H.4, H.6 Ligands: NI.55, NI.100 Ligand excluded by PLIP NI.146: 2 residues within 4Å: Chain J: H.1, H.3 Ligand excluded by PLIP NI.160: 8 residues within 4Å: Chain B: H.4, H.6 Chain H: H.4, H.6 Chain K: H.4, H.6 Ligands: NI.25, NI.115 Ligand excluded by PLIP NI.161: 2 residues within 4Å: Chain K: H.1, H.3 Ligand excluded by PLIP NI.175: 8 residues within 4Å: Chain C: H.4, H.6 Chain F: H.4, H.6 Chain L: H.4, H.6 Ligands: NI.40, NI.85 Ligand excluded by PLIP NI.176: 2 residues within 4Å: Chain L: H.1, H.3 Ligand excluded by PLIP

12 x GSH: GLUTATHIONE(Non-covalent)

GSH.12: 16 residues within 4Å: Chain A: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Chain I: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Ligands: LMT.13 12 PLIP interactions: 5 interactions with chain I, 7 interactions with chain A Hydrophobic interactions: I:V.31, I:I.32 Hydrogen bonds: I:Q.58, A:R.56, A:E.63, A:Y.98, A:Y.102, A:Y.102 Salt bridges: I:R.35, I:R.35, A:R.56, A:R.56 GSH.27: 16 residues within 4Å: Chain B: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Chain K: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Ligands: LMT.28 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain K Hydrogen bonds: B:R.56, B:E.63, B:Y.98, B:Y.102, B:Y.102, K:Q.58 Salt bridges: B:R.56, B:R.56, K:R.35, K:R.35 Hydrophobic interactions: K:V.31, K:I.32 GSH.42: 16 residues within 4Å: Chain C: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Chain L: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Ligands: LMT.43 11 PLIP interactions: 5 interactions with chain L, 6 interactions with chain C Hydrophobic interactions: L:V.31, L:I.32 Hydrogen bonds: L:Q.58, C:R.56, C:E.63, C:Y.64, C:Y.102 Salt bridges: L:R.35, L:R.35, C:R.56, C:R.56 GSH.57: 16 residues within 4Å: Chain D: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Chain J: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Ligands: LMT.58 11 PLIP interactions: 5 interactions with chain J, 6 interactions with chain D Hydrophobic interactions: J:V.31, J:I.32 Hydrogen bonds: J:Q.58, D:R.56, D:E.63, D:Y.64, D:Y.102 Salt bridges: J:R.35, J:R.35, D:R.56, D:R.56 GSH.72: 16 residues within 4Å: Chain A: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain E: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.73 12 PLIP interactions: 5 interactions with chain A, 7 interactions with chain E Hydrophobic interactions: A:V.31, A:I.32 Hydrogen bonds: A:Q.58, E:R.56, E:E.63, E:Y.98, E:Y.102, E:Y.102 Salt bridges: A:R.35, A:R.35, E:R.56, E:R.56 GSH.87: 16 residues within 4Å: Chain C: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain F: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.88 11 PLIP interactions: 5 interactions with chain C, 6 interactions with chain F Hydrophobic interactions: C:V.31, C:I.32 Hydrogen bonds: C:Q.58, F:R.56, F:E.63, F:Y.64, F:Y.102 Salt bridges: C:R.35, C:R.35, F:R.56, F:R.56 GSH.102: 16 residues within 4Å: Chain D: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain G: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.103 11 PLIP interactions: 6 interactions with chain G, 5 interactions with chain D Hydrogen bonds: G:R.56, G:E.63, G:Y.64, G:Y.102, D:Q.58 Salt bridges: G:R.56, G:R.56, D:R.35, D:R.35 Hydrophobic interactions: D:V.31, D:I.32 GSH.117: 16 residues within 4Å: Chain B: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain H: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.118 12 PLIP interactions: 7 interactions with chain H, 5 interactions with chain B Hydrogen bonds: H:R.56, H:E.63, H:Y.98, H:Y.102, H:Y.102, B:Q.58 Salt bridges: H:R.56, H:R.56, B:R.35, B:R.35 Hydrophobic interactions: B:V.31, B:I.32 GSH.132: 16 residues within 4Å: Chain E: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain I: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.133 12 PLIP interactions: 7 interactions with chain I, 5 interactions with chain E Hydrogen bonds: I:R.56, I:E.63, I:Y.64, I:Y.102, I:Y.102, E:Q.58 Salt bridges: I:R.56, I:R.56, E:R.35, E:R.35 Hydrophobic interactions: E:V.31, E:I.32 GSH.147: 16 residues within 4Å: Chain G: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain J: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.148 11 PLIP interactions: 5 interactions with chain G, 6 interactions with chain J Hydrophobic interactions: G:V.31, G:I.32 Hydrogen bonds: G:Q.58, J:R.56, J:E.63, J:Y.98, J:Y.102 Salt bridges: G:R.35, G:R.35, J:R.56, J:R.56 GSH.162: 16 residues within 4Å: Chain H: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain K: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.163 12 PLIP interactions: 5 interactions with chain H, 7 interactions with chain K Hydrophobic interactions: H:V.31, H:I.32 Hydrogen bonds: H:Q.58, K:R.56, K:E.63, K:Y.64, K:Y.102, K:Y.102 Salt bridges: H:R.35, H:R.35, K:R.56, K:R.56 GSH.177: 16 residues within 4Å: Chain F: S.28, V.31, I.32, R.35, P.42, Y.55, Q.58 Chain L: R.56, N.60, E.63, Y.64, Y.98, Y.102, R.109, L.113 Ligands: LMT.178 11 PLIP interactions: 6 interactions with chain L, 5 interactions with chain F Hydrogen bonds: L:R.56, L:E.63, L:Y.98, L:Y.102, F:Q.58 Salt bridges: L:R.56, L:R.56, F:R.35, F:R.35 Hydrophobic interactions: F:V.31, F:I.32

12 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.13: 18 residues within 4Å: Chain A: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Chain I: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Ligands: GSH.12 21 PLIP interactions: 6 interactions with chain I, 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: I:A.25, I:L.29, A:Y.64, A:L.113, A:Y.114, A:Y.114, A:A.117, A:L.120, A:L.120, A:W.121, A:W.121 Hydrogen bonds: I:I.32, I:Q.36, I:Q.36, I:P.42, A:R.109 Water bridges: A:Q.107, A:Q.107, B:R.53, B:R.53 Salt bridges: A:R.109 LMT.28: 18 residues within 4Å: Chain B: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Chain K: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Ligands: GSH.27 21 PLIP interactions: 13 interactions with chain B, 6 interactions with chain K, 2 interactions with chain A Hydrophobic interactions: B:Y.64, B:L.113, B:Y.114, B:Y.114, B:A.117, B:L.120, B:L.120, B:W.121, B:W.121, K:A.25, K:L.29 Hydrogen bonds: B:R.109, K:I.32, K:Q.36, K:Q.36, K:P.42 Water bridges: B:Q.107, B:Q.107, A:R.53, A:R.53 Salt bridges: B:R.109 LMT.43: 18 residues within 4Å: Chain C: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Chain L: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Ligands: GSH.42 22 PLIP interactions: 14 interactions with chain C, 6 interactions with chain L, 2 interactions with chain D Hydrophobic interactions: C:Y.64, C:L.113, C:Y.114, C:Y.114, C:A.117, C:L.120, C:L.120, C:W.121, C:W.121, L:A.25, L:L.29 Hydrogen bonds: C:R.109, C:Y.114, L:I.32, L:Q.36, L:Q.36, L:P.42 Water bridges: C:Q.107, C:Q.107, D:R.53, D:R.53 Salt bridges: C:R.109 LMT.58: 18 residues within 4Å: Chain D: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Chain J: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Ligands: GSH.57 22 PLIP interactions: 6 interactions with chain J, 14 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: J:A.25, J:L.29, D:Y.64, D:L.113, D:Y.114, D:Y.114, D:A.117, D:L.120, D:L.120, D:W.121, D:W.121 Hydrogen bonds: J:I.32, J:Q.36, J:Q.36, J:P.42, D:R.109, D:Y.114 Water bridges: D:Q.107, D:Q.107, C:R.53, C:R.53 Salt bridges: D:R.109 LMT.73: 18 residues within 4Å: Chain A: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain E: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.72 22 PLIP interactions: 14 interactions with chain E, 6 interactions with chain A, 2 interactions with chain F Hydrophobic interactions: E:Y.64, E:L.113, E:Y.114, E:Y.114, E:A.117, E:L.120, E:L.120, E:W.121, E:W.121, A:A.25, A:L.29 Hydrogen bonds: E:R.109, E:Y.114, A:I.32, A:Q.36, A:Q.36, A:P.42 Water bridges: E:Q.107, E:Q.107, F:R.53, F:R.53 Salt bridges: E:R.109 LMT.88: 18 residues within 4Å: Chain C: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain F: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.87 21 PLIP interactions: 13 interactions with chain F, 6 interactions with chain C, 2 interactions with chain E Hydrophobic interactions: F:Y.64, F:L.113, F:Y.114, F:Y.114, F:A.117, F:L.120, F:L.120, F:W.121, F:W.121, C:A.25, C:L.29 Hydrogen bonds: F:R.109, C:I.32, C:Q.36, C:Q.36, C:P.42 Water bridges: F:Q.107, F:Q.107, E:R.53, E:R.53 Salt bridges: F:R.109 LMT.103: 18 residues within 4Å: Chain D: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain G: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.102 21 PLIP interactions: 13 interactions with chain G, 6 interactions with chain D, 2 interactions with chain H Hydrophobic interactions: G:Y.64, G:L.113, G:Y.114, G:Y.114, G:A.117, G:L.120, G:L.120, G:W.121, G:W.121, D:A.25, D:L.29 Hydrogen bonds: G:R.109, D:I.32, D:Q.36, D:Q.36, D:P.42 Water bridges: G:Q.107, G:Q.107, H:R.53, H:R.53 Salt bridges: G:R.109 LMT.118: 18 residues within 4Å: Chain B: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain H: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.117 22 PLIP interactions: 2 interactions with chain G, 14 interactions with chain H, 6 interactions with chain B Water bridges: G:R.53, G:R.53, H:Q.107, H:Q.107 Hydrophobic interactions: H:Y.64, H:L.113, H:Y.114, H:Y.114, H:A.117, H:L.120, H:L.120, H:W.121, H:W.121, B:A.25, B:L.29 Hydrogen bonds: H:R.109, H:Y.114, B:I.32, B:Q.36, B:Q.36, B:P.42 Salt bridges: H:R.109 LMT.133: 18 residues within 4Å: Chain E: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain I: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.132 22 PLIP interactions: 14 interactions with chain I, 6 interactions with chain E, 2 interactions with chain J Hydrophobic interactions: I:Y.64, I:L.113, I:Y.114, I:Y.114, I:A.117, I:L.120, I:L.120, I:W.121, I:W.121, E:A.25, E:L.29 Hydrogen bonds: I:R.109, I:Y.114, E:I.32, E:Q.36, E:Q.36, E:P.42 Water bridges: I:Q.107, I:Q.107, J:R.53, J:R.53 Salt bridges: I:R.109 LMT.148: 18 residues within 4Å: Chain G: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain J: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.147 21 PLIP interactions: 13 interactions with chain J, 6 interactions with chain G, 2 interactions with chain I Hydrophobic interactions: J:Y.64, J:L.113, J:Y.114, J:Y.114, J:A.117, J:L.120, J:L.120, J:W.121, J:W.121, G:A.25, G:L.29 Hydrogen bonds: J:R.109, G:I.32, G:Q.36, G:Q.36, G:P.42 Water bridges: J:Q.107, J:Q.107, I:R.53, I:R.53 Salt bridges: J:R.109 LMT.163: 18 residues within 4Å: Chain H: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain K: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.162 22 PLIP interactions: 14 interactions with chain K, 2 interactions with chain L, 6 interactions with chain H Hydrophobic interactions: K:Y.64, K:L.113, K:Y.114, K:Y.114, K:A.117, K:L.120, K:L.120, K:W.121, K:W.121, H:A.25, H:L.29 Hydrogen bonds: K:R.109, K:Y.114, H:I.32, H:Q.36, H:Q.36, H:P.42 Water bridges: K:Q.107, K:Q.107, L:R.53, L:R.53 Salt bridges: K:R.109 LMT.178: 18 residues within 4Å: Chain F: A.25, L.29, I.32, R.35, Q.36, S.41, P.42 Chain L: Y.64, A.106, Q.107, R.109, L.110, L.113, Y.114, A.117, L.120, W.121 Ligands: GSH.177 21 PLIP interactions: 13 interactions with chain L, 6 interactions with chain F, 2 interactions with chain K Hydrophobic interactions: L:Y.64, L:L.113, L:Y.114, L:Y.114, L:A.117, L:L.120, L:L.120, L:W.121, L:W.121, F:A.25, F:L.29 Hydrogen bonds: L:R.109, F:I.32, F:Q.36, F:Q.36, F:P.42 Water bridges: L:Q.107, L:Q.107, K:R.53, K:R.53 Salt bridges: L:R.109

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 2 residues within 4Å: Chain A: Y.114, R.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.118 GOL.29: 2 residues within 4Å: Chain B: Y.114, R.118 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.118 GOL.44: 2 residues within 4Å: Chain C: Y.114, R.118 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.118 GOL.59: 2 residues within 4Å: Chain D: Y.114, R.118 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.118 GOL.74: 2 residues within 4Å: Chain E: Y.114, R.118 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.118 GOL.89: 2 residues within 4Å: Chain F: Y.114, R.118 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.118 GOL.104: 2 residues within 4Å: Chain G: Y.114, R.118 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:R.118 GOL.119: 2 residues within 4Å: Chain H: Y.114, R.118 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:R.118 GOL.134: 2 residues within 4Å: Chain I: Y.114, R.118 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.118 GOL.149: 2 residues within 4Å: Chain J: Y.114, R.118 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:R.118 GOL.164: 2 residues within 4Å: Chain K: Y.114, R.118 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:R.118 GOL.179: 2 residues within 4Å: Chain L: Y.114, R.118 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rinaldo-Matthis, A. et al., Arginine 104 is a key catalytic residue in leukotriene C4 synthase. J.Biol.Chem. (2010)

Release Date

2010-10-27

Peptides

Leukotriene C4 synthase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Leukotriene C4 synthase

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