SMTL ID : 3ler.1

Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni subsp. jejuni NCTC 11168

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: I.10, K.207 No protein-ligand interaction detected (PLIP) EDO.5: 7 residues within 4Å: Chain B: A.183, H.184 Chain C: D.241, E.242, Y.244, N.245, Y.296 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.244, C:N.245, C:N.245, C:Y.296

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 6 residues within 4Å: Chain B: D.241, E.242, Y.244, N.245, K.295 Chain C: H.184 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.244, B:N.245, B:N.245, B:K.295

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain B: Q.119, Q.120, S.151, D.153, T.154 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.120, B:S.151 Water bridges: B:Q.120

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 5 residues within 4Å: Chain D: Q.119, Q.120, Y.123, T.154, K.157 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:K.157 Water bridges: D:Q.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni subsp. jejuni NCTC 11168. To be Published

Release Date

2010-01-26

Peptides

Dihydrodipicolinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dihydrodipicolinate synthase

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