SMTL ID : 3lev.1 (2 other biounits)

HIV-1 antibody 2F5 in complex with epitope scaffold ES2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 12 residues within 4Å: Chain B: S.9, Q.38, P.40, G.41, T.85, Y.87, G.100, G.101, T.102, R.103 Chain C: G.44, K.45 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.41, B:T.85, B:Y.87, B:R.103

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 5 residues within 4Å: Chain A: R.5, L.8 Chain C: P.63, N.66, T.67 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.66, C:N.66, C:T.67

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain B: T.30 Chain C: R.113 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Water bridges: A:K.28 Hydrogen bonds: C:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ofek, G. et al., Elicitation of structure-specific antibodies by epitope scaffolds. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-29

Peptides

RNA polymerase sigma factor: A
2F5 ANTIBODY LIGHT CHAIN: B
2F5 ANTIBODY HEAVY CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

RNA polymerase sigma factor

2F5 ANTIBODY LIGHT CHAIN

2F5 ANTIBODY HEAVY CHAIN

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