SMTL ID : 3lex.1 (1 other biounit)

2F5 Epitope scaffold elicited anti-HIV-1 monoclonal antibody 11F10 in complex with HIV-1 GP41

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- LEU- GLU- LEU- ASP- LYS- TRP- ALA- NH2: Envelope glycoprotein gp41(Non-covalent)

LEU-LEU-GLU-LEU-ASP-LYS-TRP-ALA-NH2.1: 19 residues within 4Å: Chain A: Y.33, Y.98, G.99, N.100, Y.101, L.102, A.104 Chain B: D.31, D.33, K.35, Y.37, R.51, Y.54, L.55, K.58, G.96, T.97, F.99, W.101 23 PLIP interactions: 13 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:Y.33, A:Y.98, A:N.100, A:Y.101, A:Y.101, B:Y.37, B:Y.37, B:F.99 Hydrogen bonds: A:Y.33, A:N.100, A:N.100, A:Y.101, A:L.102, B:Y.37, B:Y.54, B:T.97 Water bridges: A:Y.101, A:Y.101, A:L.102 Salt bridges: B:K.35, B:K.58 pi-Stacking: B:W.101, B:W.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ofek, G. et al., Elicitation of structure-specific antibodies by epitope scaffolds. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-29

Peptides

11f10 Antibody Heavy Chain: A
11f10 Antibody Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

11f10 Antibody Heavy Chain

11f10 Antibody Light Chain

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