SMTL ID : 3lgr.1

Xylanase II from Trichoderma reesei cocrystallized with tris-dipicolinate europium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

3 x EU: EUROPIUM ION(Non-functional Binders)

EU.1: 3 residues within 4Å: Ligands: PDC.4, PDC.5, PDC.6 No protein-ligand interaction detected (PLIP) EU.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EU.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)

PDC.4: 5 residues within 4Å: Chain A: G.23, G.24 Ligands: EU.1, PDC.5, PDC.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.24 Water bridges: A:V.25 PDC.5: 9 residues within 4Å: Chain A: Q.4, P.5, N.19, G.21, H.22, G.23 Ligands: EU.1, PDC.4, PDC.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.5, A:N.19 Hydrogen bonds: A:Q.4, A:G.21, A:G.23 Water bridges: A:Y.17 PDC.6: 9 residues within 4Å: Chain A: T.2, I.3, Q.4, P.5, Y.17, V.25 Ligands: EU.1, PDC.4, PDC.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.2, A:Q.4 Hydrogen bonds: A:Y.17 Water bridges: A:N.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pompidor, G. et al., A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction. Acta Crystallogr.,Sect.D (2010)

Release Date

2011-01-19

Peptides

Endo-1,4-beta-xylanase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase 2

Related Entries With Identical Sequence