SMTL ID : 3lid.2 (2 other biounits)

Crystal Structure of the extracellular domain of the putative histidine kinase vpHK1S-Z8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: Q.81, R.83, K.113, R.116, Y.118, E.138, R.139, R.153, N.171 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.81, A:R.111, A:Y.118, A:R.139, A:R.139, A:N.171 Water bridges: A:R.94, A:K.113 Salt bridges: A:R.83, A:K.113, A:R.116, A:R.153

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: K.113, R.116, R.139, K.141, G.142 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: I.135, K.195, I.201, Y.210, D.212, I.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.135, A:K.195, A:D.212 EDO.4: 4 residues within 4Å: Chain A: Q.22, Y.25, S.184, R.187 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.22, A:S.184, A:S.184, A:R.187, A:R.187, A:R.187 Water bridges: A:V.186 EDO.5: 4 residues within 4Å: Chain A: G.134, I.135, K.195, S.257 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.135, A:I.135, A:S.257, A:S.257 EDO.6: 4 residues within 4Å: Chain A: Y.53, L.54, P.57, K.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.53 Water bridges: A:D.86, A:D.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structural characterization of the predominant family of histidine kinase sensor domains. J.Mol.Biol. (2010)

Release Date

2010-05-05

Peptides

Putative sensory box/GGDEF family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative sensory box/GGDEF family protein

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