SMTL ID : 3lij.1

Crystal structure of full length CpCDPK3 (cgd5_820) in complex with Ca2+ and AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.356, N.358, D.360, Q.362, E.367 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.356, A:D.360, A:Q.362, A:E.367, H2O.7 CA.2: 6 residues within 4Å: Chain A: D.400, D.402, N.404, Y.406, D.408, E.411 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.400, A:D.402, A:Y.406, A:D.408, A:E.411 CA.3: 5 residues within 4Å: Chain A: D.436, D.438, N.440, K.442, E.447 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.436, A:D.438, A:K.442, A:E.447, A:E.447 CA.4: 5 residues within 4Å: Chain A: D.470, N.472, D.474, D.476, E.481 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.470, A:D.474, A:D.476, A:E.481, A:E.481

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: N.166, D.182 Ligands: ANP.6 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.182, H2O.8

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.6: 16 residues within 4Å: Chain A: L.45, G.46, V.53, A.66, K.68, M.115, E.116, C.117, Y.118, E.122, E.165, N.166, L.168, V.181, D.182 Ligands: MG.5 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:L.45, A:E.116, A:Y.118, A:E.122, A:E.122, A:D.182 Water bridges: A:K.68, A:K.68, A:E.116, A:D.182, A:D.182 Salt bridges: A:K.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal structure of full length CpCDPK3 (cgd5_820) in complex with Ca2+ and AMPPNP. To be Published

Release Date

2010-02-02

Peptides

Calcium/calmodulin dependent protein kinase with a kinase domain and 4 calmodulin like EF hands: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin dependent protein kinase with a kinase domain and 4 calmodulin like EF hands