SMTL ID : 3lk6.4 (3 other biounits)

Beta-N-hexosaminidase N318D mutant (YBBD_N318D) from bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

monomer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: V.161, I.162, R.165, H.196, H.200, N.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.292 PEG.2: 6 residues within 4Å: Chain A: N.126, Q.129, A.400, K.403, L.404, K.407 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.126, A:K.403 PEG.3: 5 residues within 4Å: Chain A: R.122, S.123, R.124, I.125, R.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.124, A:I.125, A:R.176 PEG.4: 4 residues within 4Å: Chain A: K.453, K.454, I.455, K.456 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.456

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: T.80, D.81, L.141, G.142, K.384 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krug, M. et al., Beta-N-hexosaminidase N318D mutant (YBBD_N318D) from bacillus subtilis. To be Published

Release Date

2011-05-25

Peptides

Lipoprotein ybbD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Lipoprotein ybbD

Related Entries With Identical Sequence