SMTL ID : 3lkw.2 (1 other biounit)

Crystal Structure of Dengue Virus 1 NS2B/NS3 protease active site mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: S.221, Q.222 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: S.221, Q.222 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: S.221, Q.222 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain D: S.221, Q.222 Ligand excluded by PLIP

4 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: H.23, H.28, E.144 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.23, A:H.28, A:E.144, A:E.144, H2O.2 CD.6: 3 residues within 4Å: Chain B: H.23, H.28, E.144 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.23, B:H.28, B:E.144, B:E.144, H2O.5 CD.10: 3 residues within 4Å: Chain C: H.23, H.28, E.144 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.23, C:H.28, C:E.144, C:E.144, H2O.9 CD.14: 3 residues within 4Å: Chain D: H.23, H.28, E.144 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.23, D:H.28, D:E.144, D:E.144, H2O.12

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: E.33, Q.35, K.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.33 Salt bridges: A:K.41, A:K.43 SO4.7: 3 residues within 4Å: Chain B: E.33, Q.35, K.41 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.33 Salt bridges: B:K.41, B:K.43 SO4.11: 3 residues within 4Å: Chain C: E.33, Q.35, K.41 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.33 Salt bridges: C:K.41, C:K.43 SO4.15: 3 residues within 4Å: Chain D: E.33, Q.35, K.41 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.33 Salt bridges: D:K.41, D:K.43

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: H.101, G.201, N.202, G.203, Y.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.125, A:G.201, A:G.203 GOL.8: 5 residues within 4Å: Chain B: H.101, G.201, N.202, G.203, Y.211 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.125, B:G.201, B:G.203 GOL.12: 5 residues within 4Å: Chain C: H.101, G.201, N.202, G.203, Y.211 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.125, C:G.201, C:G.203, C:Y.211 GOL.16: 5 residues within 4Å: Chain D: H.101, G.201, N.202, G.203, Y.211 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.125, D:G.201, D:G.203, D:Y.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandramouli, S. et al., Serotype-specific structural differences in the protease-cofactor complexes of the dengue virus family. J.Virol. (2010)

Release Date

2010-03-02

Peptides

fusion protein of nonstructural protein 2B and nonstructural protein 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

fusion protein of nonstructural protein 2B and nonstructural protein 3

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