SMTL ID : 3ll3.1

The crystal structure of ligand bound xylulose kinase from Lactobacillus acidophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 11 residues within 4Å: Chain A: G.260, T.261, G.300, I.301, F.303, N.304, P.317, L.321, G.401, G.402, F.403 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.261, A:T.261, A:T.261, A:N.304, A:G.402 Water bridges: A:G.300, A:N.304, A:K.405, A:S.406, A:Q.428 pi-Stacking: A:F.303

2 x DXP: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE(Non-covalent)

DXP.2: 7 residues within 4Å: Chain A: H.129, N.297, G.341, G.342, E.343, R.344, A.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.297 Salt bridges: A:H.129 DXP.5: 7 residues within 4Å: Chain B: H.129, N.297, G.341, G.342, E.343, R.344, A.350 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.297 Water bridges: B:A.350 Salt bridges: B:H.129

1 x XUL: D-XYLULOSE(Non-covalent)

XUL.3: 10 residues within 4Å: Chain A: Q.79, M.80, H.81, W.99, D.239, R.266, F.281, Y.283, P.295, R.344 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.266, A:R.266, A:R.344, A:R.344

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 12 residues within 4Å: Chain B: G.260, T.261, G.300, I.301, F.303, N.304, P.317, L.321, G.401, G.402, F.403, K.405 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.261, B:T.261, B:N.304, B:G.402, B:K.405 Water bridges: B:G.300, B:N.304, B:N.304, B:N.304, B:K.405 pi-Stacking: B:F.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., The crystal structure of xylulose kinase from Lactobacillus acidophilus. To be Published

Release Date

2010-03-23

Peptides

Gluconate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gluconate kinase

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