SMTL ID : 3ll7.1

Crystal structure of putative methyltransferase PG_1098 from Porphyromonas gingivalis W83

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: C.367, R.368, N.369, F.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.369, A:F.370, A:F.370 Water bridges: A:R.368 EDO.2: 4 residues within 4Å: Chain A: I.365, P.374, I.375, R.378 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.365, A:R.378 EDO.6: 5 residues within 4Å: Chain A: T.101, G.102, G.103, D.170 Ligands: FMT.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.102, A:L.104, A:D.170 EDO.7: 5 residues within 4Å: Chain A: K.9, E.10, A.13, W.17, Y.40 No protein-ligand interaction detected (PLIP)

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain A: S.78, G.102, L.104, G.105, I.106, D.107 Ligands: EDO.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.104, A:G.105, A:I.106, A:D.107, A:D.107 Water bridges: A:F.108 FMT.4: 8 residues within 4Å: Chain A: A.260, I.261, N.262, V.269, I.270, F.272, H.298 Ligands: FMT.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.262, A:F.272 FMT.5: 3 residues within 4Å: Chain A: L.302, F.307, H.324 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.368 FMT.8: 6 residues within 4Å: Chain A: N.262, L.264, H.298, P.336, G.337 Ligands: FMT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.262, A:G.337 Water bridges: A:F.335 FMT.9: 5 residues within 4Å: Chain A: H.320, N.322, N.369, T.395, K.401 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.322, A:N.369, A:K.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of putative methyltransferase PG_1098 from Porphyromonas gingivalis W83. To be Published

Release Date

2010-02-16

Peptides

Putative methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative methyltransferase