SMTL ID : 3lmn.1 (3 other biounits)

Oligomeric structure of the DUSP domain of human USP15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-octamer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: Q.79, L.81, R.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.79, A:L.81, A:R.117, A:R.117 FMT.3: 3 residues within 4Å: Chain C: Q.79, L.81, R.117 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.79, C:L.81, C:R.117, C:R.117 FMT.5: 3 residues within 4Å: Chain E: Q.79, L.81, R.117 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Q.79, E:L.81, E:R.117, E:R.117 FMT.7: 3 residues within 4Å: Chain G: Q.79, L.81, R.117 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:Q.79, G:L.81, G:R.117, G:R.117

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 6 residues within 4Å: Chain B: K.44, F.49, D.50 Chain F: K.44, E.88, I.92 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:D.50 Salt bridges: B:K.44, F:K.44 Hydrophobic interactions: F:I.92 ACY.4: 6 residues within 4Å: Chain D: K.44, F.49, D.50 Chain H: K.44, E.88, I.92 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain D Hydrophobic interactions: H:I.92 Salt bridges: H:K.44, D:K.44 Hydrogen bonds: D:D.50 ACY.6: 6 residues within 4Å: Chain B: K.44, E.88, I.92 Chain F: K.44, F.49, D.50 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: B:I.92 Salt bridges: B:K.44, F:K.44 Hydrogen bonds: F:D.50 ACY.8: 6 residues within 4Å: Chain D: K.44, E.88, I.92 Chain H: K.44, F.49, D.50 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain H Hydrophobic interactions: D:I.92 Salt bridges: D:K.44, H:K.44 Hydrogen bonds: H:D.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.R. et al., Crystal Structure of the Human Ubiquitin-Specific Protease 15 DUSP Domain. To be Published

Release Date

2010-03-23

Peptides

Ubiquitin carboxyl-terminal hydrolase 15: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Ubiquitin carboxyl-terminal hydrolase 15

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