SMTL ID : 3lmz.1

Crystal structure of Putative sugar isomerase. (YP_001305105.1) from Parabacteroides distasonis ATCC 8503 at 1.44 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: Y.25, K.50, P.82, Y.84, H.132, H.134, H.166, K.191, E.231, E.233 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.25, A:Y.25 Hydrogen bonds: A:E.231 Water bridges: A:Y.25, A:K.50, A:K.50, A:E.231 Salt bridges: A:K.50, A:H.132, A:H.132, A:H.134, A:H.134, A:H.166, A:K.191 CIT.4: 10 residues within 4Å: Chain B: Y.25, K.50, P.82, Y.84, H.132, H.134, H.166, K.191, E.231, E.233 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.25, B:Y.25 Hydrogen bonds: B:Y.84, B:H.132, B:E.231 Water bridges: B:Y.25, B:K.50, B:K.50 Salt bridges: B:K.50, B:H.132, B:H.132, B:H.134, B:H.134, B:H.166, B:K.191

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: K.99, E.124, Y.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.99 Water bridges: A:Y.125, A:Y.125 PEG.5: 3 residues within 4Å: Chain B: K.99, E.124, Y.125 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.99, B:Y.125 Water bridges: B:Y.125, B:Y.125

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 3 residues within 4Å: Chain A: N.57, S.58, R.100 No protein-ligand interaction detected (PLIP) PGE.6: 3 residues within 4Å: Chain B: N.57, S.58, R.100 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative sugar isomerase. (YP_001305105.1) from Parabacteroides distasonis ATCC 8503 at 1.44 A resolution. To be published

Release Date

2010-02-23

Peptides

Putative sugar isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative sugar isomerase