SMTL ID : 3ln3.2 (1 other biounit)

Crystal structure of Putative reductase (NP_038806.2) from MUS MUSCULUS at 1.18 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.172, R.176 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.172, A:R.176, A:R.176 Salt bridges: A:R.172, A:R.176 SO4.2: 4 residues within 4Å: Chain A: K.162 Chain B: G.159, K.162 Ligands: SO4.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.159 SO4.3: 2 residues within 4Å: Chain A: K.10 Chain B: K.186 No protein-ligand interaction detected (PLIP) SO4.6: 2 residues within 4Å: Chain B: R.172, R.176 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.172, B:R.176, B:R.176 Salt bridges: B:R.172, B:R.176 SO4.7: 4 residues within 4Å: Chain A: G.159, K.162 Chain B: K.162 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.159 SO4.8: 2 residues within 4Å: Chain A: K.186 Chain B: K.10 No protein-ligand interaction detected (PLIP)

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.4: 29 residues within 4Å: Chain A: G.23, T.24, Y.25, D.51, Y.56, K.85, H.118, Y.119, S.167, N.168, Q.191, Y.217, G.218, A.219, L.220, G.221, T.222, Q.223, Y.225, L.237, A.254, L.269, A.270, Q.271, S.272, E.277, E.280, N.281 Ligands: MRD.5 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.217, A:Y.217, A:Y.217 Hydrogen bonds: A:T.24, A:Y.25, A:D.51, A:D.51, A:Y.56, A:S.167, A:N.168, A:Q.191, A:G.218, A:L.220, A:T.222, A:Q.223, A:Q.223, A:Y.225, A:Q.271, A:Q.271, A:E.277, A:E.280, A:E.280, A:N.281 Water bridges: A:A.219, A:S.252, A:S.252, A:A.254, A:E.277 NAD.9: 29 residues within 4Å: Chain B: G.23, T.24, Y.25, D.51, Y.56, K.85, H.118, Y.119, S.167, N.168, Q.191, Y.217, G.218, A.219, L.220, G.221, T.222, Q.223, Y.225, L.237, A.254, L.269, A.270, Q.271, S.272, E.277, E.280, N.281 Ligands: MRD.10 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:Y.217, B:Y.217, B:Y.217 Hydrogen bonds: B:T.24, B:Y.25, B:D.51, B:S.167, B:N.168, B:Q.191, B:G.218, B:L.220, B:T.222, B:Q.223, B:Q.223, B:Q.271, B:Q.271, B:E.280, B:N.281 Water bridges: B:A.219, B:S.252, B:S.252, B:A.254, B:E.277

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.5: 11 residues within 4Å: Chain A: Y.25, A.55, Y.56, W.87, H.118, Y.119, F.130, W.228, L.307, F.311 Ligands: NAD.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.25, A:F.130, A:W.228, A:L.307, A:F.311 Hydrogen bonds: A:H.118, A:Y.119, A:Y.119 MRD.10: 11 residues within 4Å: Chain B: Y.25, A.55, Y.56, W.87, H.118, Y.119, F.130, W.228, L.307, F.311 Ligands: NAD.9 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.25, B:F.130, B:W.228, B:L.307, B:F.311 Hydrogen bonds: B:H.118, B:Y.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative reductase (NP_038806.2) from MUS MUSCULUS at 1.18 A resolution. To be published

Release Date

2010-02-16

Peptides

Dihydrodiol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dihydrodiol dehydrogenase

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