SMTL ID : 3ln9.1

Crystal structure of the fibril-specific B10 antibody fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 7 residues within 4Å: Chain A: Y.37, S.56, Q.57, S.58, M.60, R.61, R.105 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.37, A:S.56, A:Q.57, A:Q.57, A:S.58, A:M.60 Water bridges: A:Y.63 Salt bridges: A:R.61, A:R.61, A:R.105

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.31, T.32, H.35, R.36, Y.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.32, A:T.32, A:R.36, A:Y.117, A:Y.117 Water bridges: A:T.32 GOL.3: 3 residues within 4Å: Chain A: I.51, N.107, V.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.108 GOL.4: 5 residues within 4Å: Chain A: R.36, T.104, T.110, R.111, Q.112 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.36, A:R.36, A:R.111, A:R.111, A:Q.112, A:Q.112

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: R.61, R.105 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.61, A:R.61 Salt bridges: A:R.61, A:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haupt, C. et al., Amyloid Fibril Recognition with the Conformational B10 Antibody Fragment Depends on Electrostatic Interactions. J.Mol.Biol. (2010)

Release Date

2010-12-15

Peptides

Immunoglobulin heavy chain antibody variable domain B10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Immunoglobulin heavy chain antibody variable domain B10