SMTL ID : 3lnd.1 (1 other biounit)

Crystal structure of cadherin-6 EC12 W4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.100, N.102, D.132, D.134, S.141, D.187 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.134, A:S.141, A:D.187 CA.2: 8 residues within 4Å: Chain A: E.11, E.66, D.98, I.99, D.101, N.102, D.134 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.66, A:E.66, A:I.99, A:D.101 CA.3: 6 residues within 4Å: Chain A: E.11, E.12, D.64, E.66, D.101 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.12, A:D.64, A:E.66, A:D.101 CA.4: 6 residues within 4Å: Chain B: N.100, N.102, D.132, D.134, S.141, D.187 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.134, B:S.141, B:D.187 CA.5: 6 residues within 4Å: Chain B: E.11, E.66, D.98, I.99, D.101, D.134 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.98, B:I.99, B:D.101, B:D.134 CA.6: 5 residues within 4Å: Chain B: E.11, E.12, D.64, E.66, D.101 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.12, B:D.64, B:E.66, B:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., Two-step adhesive binding by classical cadherins. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-03-02

Peptides

Cdh6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cdh6 protein

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