SMTL ID : 3lng.1

Crystal structure of E-cadherin EC12 AA extension

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.104, N.106, D.136, D.138, N.145, D.197 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.106, A:D.136, A:D.138, A:N.145, A:D.197 CA.2: 7 residues within 4Å: Chain A: E.13, E.71, D.102, Q.103, D.105, N.106, D.138 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:D.102, A:Q.103, A:D.105, A:D.138 CA.3: 4 residues within 4Å: Chain A: E.13, D.69, E.71, D.105 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.13, A:D.69, A:E.71, A:D.105, H2O.1, H2O.1 CA.4: 6 residues within 4Å: Chain B: N.104, N.106, D.136, D.138, N.145, D.197 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.106, B:D.136, B:D.138, B:N.145, B:D.197 CA.5: 8 residues within 4Å: Chain B: E.13, E.71, D.102, Q.103, D.105, N.106, D.138 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.13, B:D.102, B:Q.103, B:D.105, B:D.138 CA.6: 5 residues within 4Å: Chain B: E.13, D.69, E.71, D.105 Ligands: CA.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.13, B:D.69, B:E.71, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., Two-step adhesive binding by classical cadherins. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-03-02

Peptides

Cadherin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-1