SMTL ID : 3lni.1

Crystal structure of E-cadherin EC12 E89A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.104, A:D.134, A:D.134, A:D.136, A:N.143 CA.2: 7 residues within 4Å: Chain A: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.69, A:E.69, A:D.100, A:D.136 CA.3: 4 residues within 4Å: Chain A: E.11, D.67, E.69, D.103 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.11, A:D.67, A:E.69, A:D.103, H2O.1, H2O.1 CA.4: 6 residues within 4Å: Chain B: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.104, B:D.134, B:D.136, B:N.143, B:D.195 CA.5: 8 residues within 4Å: Chain B: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.69, B:Q.101, B:D.103, B:D.136 CA.6: 5 residues within 4Å: Chain B: E.11, D.67, E.69, D.103 Ligands: CA.5 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.11, B:D.67, B:E.69, B:D.103, H2O.12, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., Two-step adhesive binding by classical cadherins. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-03-02

Peptides

Cadherin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-1