SMTL ID : 3lnp.1

Crystal Structure of Amidohydrolase family Protein OLEI01672_1_465 from Oleispira antarctica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: H.92, H.94, H.246, D.334 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.92, A:H.94, A:D.334, H2O.1, H2O.9 CA.2: 3 residues within 4Å: Chain A: E.307, N.339, D.341 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.307, A:D.341, H2O.6, H2O.6, H2O.6 CA.6: 4 residues within 4Å: Chain B: H.92, H.94, H.246, D.334 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.92, B:H.94, B:D.334, H2O.13, H2O.21 CA.7: 3 residues within 4Å: Chain B: E.307, N.339, D.341 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.307, B:D.341, H2O.18, H2O.18, H2O.18

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 2 residues within 4Å: Chain A: H.22, I.71 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.71 Salt bridges: A:H.22 ACY.4: 6 residues within 4Å: Chain A: P.318, I.319, A.320, K.321, V.358, S.359 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.358 Hydrogen bonds: A:A.320, A:K.321 ACY.8: 2 residues within 4Å: Chain B: H.22, I.71 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.71 Water bridges: B:H.22 Salt bridges: B:H.22 ACY.9: 6 residues within 4Å: Chain B: P.318, I.319, A.320, K.321, V.358, S.359 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.358 Hydrogen bonds: B:A.320, B:K.321

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 2 residues within 4Å: Chain A: F.316 Ligands: PEG.10 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.360 PEG.10: 2 residues within 4Å: Chain B: F.316 Ligands: PEG.5 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kube, M. et al., Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica. Nat Commun (2013)

Release Date

2010-02-16

Peptides

Amidohydrolase family Protein OLEI01672_1_465: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Amidohydrolase family Protein OLEI01672_1_465