SMTL ID : 3lnx.1

Second PDZ domain from human PTP1E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-hexamer

Ligands

25 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: L.18 Ligand excluded by PLIP IOD.2: 5 residues within 4Å: Chain A: Q.83 Chain E: Q.83 Chain F: A.12, Q.83, V.84 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: V.30, R.31 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: K.72 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: N.14, S.48 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: P.1, K.91 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain B: L.18 Ligand excluded by PLIP IOD.9: 6 residues within 4Å: Chain B: Q.83, V.84 Chain C: Q.83, V.84 Chain D: Q.83, V.84 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain B: H.71 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: P.1, K.91 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain C: L.18 Ligand excluded by PLIP IOD.16: 1 residues within 4Å: Chain C: V.37 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain C: A.39, V.40 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain C: P.1, K.91 Ligand excluded by PLIP IOD.21: 1 residues within 4Å: Chain D: L.18 Ligand excluded by PLIP IOD.22: 1 residues within 4Å: Chain D: D.15 Ligand excluded by PLIP IOD.23: 4 residues within 4Å: Chain B: N.14, S.48 Chain D: G.82, Q.83 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Chain D: P.1, K.91 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain C: G.82, Q.83 Chain D: S.48 Ligand excluded by PLIP IOD.27: 2 residues within 4Å: Chain E: V.30, R.31 Ligand excluded by PLIP IOD.28: 1 residues within 4Å: Chain E: L.18 Ligand excluded by PLIP IOD.29: 2 residues within 4Å: Chain E: T.23, G.24 Ligand excluded by PLIP IOD.30: 2 residues within 4Å: Chain E: P.1, K.91 Ligand excluded by PLIP IOD.35: 1 residues within 4Å: Chain F: L.18 Ligand excluded by PLIP IOD.36: 1 residues within 4Å: Chain F: K.91 Ligand excluded by PLIP

14 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.7: 8 residues within 4Å: Chain A: A.60, V.61, N.62, G.63, H.86, L.87, L.88 Chain B: I.6 No protein-ligand interaction detected (PLIP) SCN.12: 8 residues within 4Å: Chain A: I.6 Chain B: A.60, V.61, N.62, G.63, H.86, L.87, L.88 1 PLIP interactions: 1 interactions with chain B Water bridges: B:H.86 SCN.13: 6 residues within 4Å: Chain A: R.57, L.59 Chain B: R.57, L.59, E.67 Ligands: SCN.14 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:R.57, B:I.35 Hydrogen bonds: B:R.57 SCN.14: 5 residues within 4Å: Chain A: R.57, E.67 Chain B: R.57, L.59 Ligands: SCN.13 No protein-ligand interaction detected (PLIP) SCN.19: 8 residues within 4Å: Chain C: A.60, V.61, N.62, G.63, H.86, L.87, L.88 Chain E: I.6 No protein-ligand interaction detected (PLIP) SCN.20: 4 residues within 4Å: Chain C: I.20, S.21, V.22, H.71 No protein-ligand interaction detected (PLIP) SCN.26: 8 residues within 4Å: Chain D: A.60, V.61, N.62, G.63, H.86, L.87, L.88 Chain F: I.6 No protein-ligand interaction detected (PLIP) SCN.31: 6 residues within 4Å: Chain C: R.57, L.66, E.67 Chain E: R.57, L.59 Ligands: SCN.34 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Water bridges: E:R.57 Hydrogen bonds: C:R.57 SCN.32: 8 residues within 4Å: Chain C: I.6 Chain E: A.60, V.61, N.62, G.63, H.86, L.87, L.88 No protein-ligand interaction detected (PLIP) SCN.33: 4 residues within 4Å: Chain E: N.14, S.48 Chain F: G.82, Q.83 1 PLIP interactions: 1 interactions with chain F Water bridges: F:Q.83 SCN.34: 6 residues within 4Å: Chain C: R.57, L.59 Chain E: R.57, L.66, E.67 Ligands: SCN.31 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.57 SCN.37: 2 residues within 4Å: Chain F: H.71, K.72 No protein-ligand interaction detected (PLIP) SCN.38: 8 residues within 4Å: Chain D: I.6 Chain F: A.60, V.61, N.62, G.63, H.86, L.87, L.88 No protein-ligand interaction detected (PLIP) SCN.39: 4 residues within 4Å: Chain A: G.82, Q.83 Chain F: N.14, S.48 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E. Biochemistry (2010)

Release Date

2010-02-23

Peptides

Tyrosine-protein phosphatase non-receptor type 13: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Tyrosine-protein phosphatase non-receptor type 13

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