SMTL ID : 3lot.1

Crystal structure of PROTEIN OF UNKNOWN FUNCTION (NP_070038.1) from ARCHAEOGLOBUS FULGIDUS at 1.89 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.50, H.52, E.262 Ligands: UNL.2, UNL.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.50, A:H.52, A:E.262 ZN.5: 5 residues within 4Å: Chain B: H.50, H.52, E.262 Ligands: UNL.6, UNL.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.50, B:H.52, B:E.262 ZN.8: 5 residues within 4Å: Chain C: H.50, H.52, E.262 Ligands: UNL.9, UNL.10 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.50, C:H.52, C:E.262 ZN.12: 4 residues within 4Å: Chain D: H.50, H.52, E.262 Ligands: UNL.13 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.50, D:H.52, D:E.262, H2O.48, H2O.55

8 x UNL: UNKNOWN LIGAND

UNL.2: 12 residues within 4Å: Chain A: H.50, H.52, T.86, G.88, T.113, N.115, Y.176, R.258, E.262 Ligands: ZN.1, UNL.3, UNL.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.86, A:G.88, A:T.113, A:T.113, A:N.115, A:Y.176, A:Y.176, A:R.258, A:R.258 UNL.3: 8 residues within 4Å: Chain A: Y.176, I.202, V.237, R.258, E.262, D.263 Ligands: UNL.2, UNL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.176, A:R.258, A:D.263 UNL.4: 8 residues within 4Å: Chain A: A.17, H.52, G.88, G.89, E.262 Ligands: ZN.1, UNL.2, UNL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.88 Water bridges: A:A.17, A:G.91, A:G.91 UNL.6: 13 residues within 4Å: Chain B: H.50, H.52, T.86, G.88, T.113, N.115, E.174, Y.176, I.202, R.258, E.262 Ligands: ZN.5, UNL.7 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:H.50, B:H.50, B:T.86, B:T.86, B:G.88, B:T.113, B:N.115, B:E.174, B:Y.176, B:Y.176, B:R.258, B:R.258 UNL.7: 7 residues within 4Å: Chain B: A.17, H.52, G.88, G.89, E.262 Ligands: ZN.5, UNL.6 2 PLIP interactions: 2 interactions with chain B Water bridges: B:A.17, B:G.91 UNL.9: 11 residues within 4Å: Chain C: H.50, H.52, T.86, G.88, T.113, N.115, Y.176, R.258, E.262 Ligands: ZN.8, UNL.10 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:H.50, C:T.86, C:G.88, C:T.113, C:N.115, C:Y.176, C:R.258, C:R.258 UNL.10: 10 residues within 4Å: Chain C: A.17, H.52, G.88, G.89, Y.176, R.258, E.262, D.263 Ligands: ZN.8, UNL.9 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.88, C:Y.176, C:R.258 Water bridges: C:I.18, C:G.90, C:T.92, C:D.263 UNL.13: 7 residues within 4Å: Chain D: H.50, H.52, T.86, G.88, T.113, N.115 Ligands: ZN.12 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.86, D:T.86, D:G.88, D:T.113, D:N.115, D:N.115

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.11: 4 residues within 4Å: Chain A: D.147, I.148, V.149 Chain C: R.151 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.148 Hydrogen bonds: A:V.149, A:V.149 Salt bridges: C:R.151

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of PROTEIN OF UNKNOWN FUNCTION (NP_070038.1) from ARCHAEOGLOBUS FULGIDUS at 1.89 A resolution. To be published

Release Date

2010-02-23

Peptides

uncharacterized protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

uncharacterized protein