SMTL ID : 3lp6.1 (1 other biounit)

Crystal Structure of Rv3275c-E60A from Mycobacterium tuberculosis at 1.7A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-octamer

Ligands

44 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: G.15, D.19, A.70, G.71 Ligand excluded by PLIP FMT.2: 4 residues within 4Å: Chain A: R.56, A.82, A.83 Ligands: FMT.18 Ligand excluded by PLIP FMT.3: 6 residues within 4Å: Chain A: G.15, S.43, A.44, H.45, R.46, L.76 Ligand excluded by PLIP FMT.4: 4 residues within 4Å: Chain A: T.47, P.48, E.49, A.50 Ligand excluded by PLIP FMT.6: 6 residues within 4Å: Chain F: R.56 Chain G: T.47, P.48, E.49, A.50 Ligands: FMT.32 Ligand excluded by PLIP FMT.7: 5 residues within 4Å: Chain B: T.47, P.48, E.49, A.50 Ligands: GOL.13 Ligand excluded by PLIP FMT.8: 5 residues within 4Å: Chain B: R.56, A.82, A.83 Chain C: P.48 Ligands: FMT.30 Ligand excluded by PLIP FMT.9: 2 residues within 4Å: Chain B: R.40, V.41 Ligand excluded by PLIP FMT.10: 7 residues within 4Å: Chain B: G.15, S.43, A.44, H.45, R.46 Ligands: GOL.5, FMT.12 Ligand excluded by PLIP FMT.11: 4 residues within 4Å: Chain A: K.160 Chain B: S.16, D.17, R.46 Ligand excluded by PLIP FMT.12: 5 residues within 4Å: Chain B: S.43, H.45, R.46 Chain C: P.111 Ligands: FMT.10 Ligand excluded by PLIP FMT.14: 5 residues within 4Å: Chain C: G.15, S.16, D.19, A.70, G.71 Ligand excluded by PLIP FMT.15: 5 residues within 4Å: Chain C: E.32, F.33, R.145, F.149, R.152 Ligand excluded by PLIP FMT.16: 6 residues within 4Å: Chain C: S.16, D.17, V.41, R.46 Chain F: V.156, K.160 Ligand excluded by PLIP FMT.17: 5 residues within 4Å: Chain C: G.15, S.43, A.44, H.45, L.76 Ligand excluded by PLIP FMT.18: 5 residues within 4Å: Chain D: T.47, P.48, E.49, A.50 Ligands: FMT.2 Ligand excluded by PLIP FMT.19: 4 residues within 4Å: Chain D: G.15, S.43, A.44, H.45 Ligand excluded by PLIP FMT.20: 1 residues within 4Å: Chain E: V.41 Ligand excluded by PLIP FMT.21: 7 residues within 4Å: Chain D: R.133, Q.150, L.153 Chain E: H.45, R.46 Chain H: A.82, V.114 Ligand excluded by PLIP FMT.22: 5 residues within 4Å: Chain D: G.15, D.19, A.70, G.71, L.95 Ligand excluded by PLIP FMT.23: 2 residues within 4Å: Chain D: E.32, R.145 Ligand excluded by PLIP FMT.24: 3 residues within 4Å: Chain D: A.4, G.5, A.37 Ligand excluded by PLIP FMT.25: 4 residues within 4Å: Chain E: G.15, D.19, A.70, G.71 Ligand excluded by PLIP FMT.26: 4 residues within 4Å: Chain E: R.56, A.82, A.83 Ligands: FMT.42 Ligand excluded by PLIP FMT.27: 6 residues within 4Å: Chain E: G.15, S.43, A.44, H.45, R.46, L.76 Ligand excluded by PLIP FMT.28: 4 residues within 4Å: Chain E: T.47, P.48, E.49, A.50 Ligand excluded by PLIP FMT.30: 6 residues within 4Å: Chain B: R.56 Chain C: T.47, P.48, E.49, A.50 Ligands: FMT.8 Ligand excluded by PLIP FMT.31: 5 residues within 4Å: Chain F: T.47, P.48, E.49, A.50 Ligands: GOL.37 Ligand excluded by PLIP FMT.32: 5 residues within 4Å: Chain F: R.56, A.82, A.83 Chain G: P.48 Ligands: FMT.6 Ligand excluded by PLIP FMT.33: 2 residues within 4Å: Chain F: R.40, V.41 Ligand excluded by PLIP FMT.34: 7 residues within 4Å: Chain F: G.15, S.43, A.44, H.45, R.46 Ligands: GOL.29, FMT.36 Ligand excluded by PLIP FMT.35: 4 residues within 4Å: Chain E: K.160 Chain F: S.16, D.17, R.46 Ligand excluded by PLIP FMT.36: 5 residues within 4Å: Chain F: S.43, H.45, R.46 Chain G: P.111 Ligands: FMT.34 Ligand excluded by PLIP FMT.38: 5 residues within 4Å: Chain G: G.15, S.16, D.19, A.70, G.71 Ligand excluded by PLIP FMT.39: 5 residues within 4Å: Chain G: E.32, F.33, R.145, F.149, R.152 Ligand excluded by PLIP FMT.40: 6 residues within 4Å: Chain B: V.156, K.160 Chain G: S.16, D.17, V.41, R.46 Ligand excluded by PLIP FMT.41: 5 residues within 4Å: Chain G: G.15, S.43, A.44, H.45, L.76 Ligand excluded by PLIP FMT.42: 5 residues within 4Å: Chain H: T.47, P.48, E.49, A.50 Ligands: FMT.26 Ligand excluded by PLIP FMT.43: 4 residues within 4Å: Chain H: G.15, S.43, A.44, H.45 Ligand excluded by PLIP FMT.44: 1 residues within 4Å: Chain A: V.41 Ligand excluded by PLIP FMT.45: 7 residues within 4Å: Chain A: H.45, R.46 Chain D: A.82, V.114 Chain H: R.133, Q.150, L.153 Ligand excluded by PLIP FMT.46: 5 residues within 4Å: Chain H: G.15, D.19, A.70, G.71, L.95 Ligand excluded by PLIP FMT.47: 2 residues within 4Å: Chain H: E.32, R.145 Ligand excluded by PLIP FMT.48: 3 residues within 4Å: Chain H: A.4, G.5, A.37 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain B: G.15, S.16, D.19, G.69, A.70, G.71, L.95 Ligands: FMT.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.15, B:S.16, B:D.19, B:G.69, B:G.71 GOL.13: 8 residues within 4Å: Chain A: Q.150, D.151 Chain B: R.46, P.48 Chain C: R.56, A.82, A.83 Ligands: FMT.7 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:Q.150, C:R.56, C:R.56 Water bridges: A:Q.150, A:Q.150, A:D.151 GOL.29: 8 residues within 4Å: Chain F: G.15, S.16, D.19, G.69, A.70, G.71, L.95 Ligands: FMT.34 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.15, F:S.16, F:D.19, F:G.69, F:G.71 GOL.37: 8 residues within 4Å: Chain E: Q.150, D.151 Chain F: R.46, P.48 Chain G: R.56, A.82, A.83 Ligands: FMT.31 5 PLIP interactions: 2 interactions with chain G, 3 interactions with chain E Hydrogen bonds: G:R.56, G:R.56, E:Q.150 Water bridges: E:Q.150, E:Q.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H. et al., Crystal Structure of Rv3275c-E60A from Mycobacterium tuberculosis at 1.7A Resolution. To be Published

Release Date

2010-06-16

Peptides

Phosphoribosylaminoimidazole carboxylase catalytic subunit: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Phosphoribosylaminoimidazole carboxylase catalytic subunit

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