SMTL ID : 3lph.1 (1 other biounit)

Crystal structure of the HIV-1 Rev dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.41 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.41 SO4.2: 4 residues within 4Å: Chain A: R.43, R.46, R.50 Chain B: R.60 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.46, A:R.50, B:R.60

7 x BR: BROMIDE ION(Non-covalent)

BR.3: 3 residues within 4Å: Chain A: P.33, R.44 Ligands: MLI.6 Ligand excluded by PLIP BR.4: 1 residues within 4Å: Chain A: R.45 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: Q.38, A.39, N.42 Ligand excluded by PLIP BR.7: 1 residues within 4Å: Chain B: N.32 Ligand excluded by PLIP BR.8: 1 residues within 4Å: Chain B: R.19 Ligand excluded by PLIP BR.9: 1 residues within 4Å: Chain B: R.62 Ligand excluded by PLIP BR.10: 2 residues within 4Å: Chain B: R.62, S.63 Ligand excluded by PLIP

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.6: 5 residues within 4Å: Chain A: P.33, R.37, R.40, R.44 Ligands: BR.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.40 Salt bridges: A:R.37, A:R.40, A:R.44, A:R.44 MLI.11: 4 residues within 4Å: Chain B: Q.38, A.39, N.42, R.46 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.39, B:N.42 Salt bridges: B:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daugherty, M.D. et al., Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-12-08

Peptides

Protein Rev: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein Rev

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