SMTL ID : 3lqb.1

Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: C.71, H.99, E.100, H.103, H.109, Y.155 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Water bridges: A:C.71, A:R.182 Salt bridges: A:H.99, A:H.109

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.99, H.103, H.109 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.99, A:H.103, A:H.109

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Q.59, A.60, D.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.60, A:D.61, A:D.61 Water bridges: A:I.58 EDO.4: 5 residues within 4Å: Chain A: Q.48, L.185, S.186, K.187, I.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.185 Water bridges: A:K.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okada, A. et al., Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio. J.Mol.Biol. (2010)

Release Date

2010-09-08

Peptides

LOC792177 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LOC792177 protein