SMTL ID : 3lqx.1

SRP ribonucleoprotein core complexed with cobalt hexammine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

2 x K: POTASSIUM ION(Non-functional Binders)

K.1: 5 residues within 4Å: Chain B: U.17, C.18, C.34, A.35, G.36 No protein-ligand interaction detected (PLIP) K.2: 2 residues within 4Å: Chain B: U.17, C.34 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain B: C.43, A.44 Ligands: NCO.4, NCO.10 Ligand excluded by PLIP

8 x NCO: COBALT HEXAMMINE(III)(Non-functional Binders)

NCO.4: 8 residues within 4Å: Chain B: U.6, G.7, U.8, U.9, A.40, G.41, G.42 Ligands: CL.3 No protein-ligand interaction detected (PLIP) NCO.5: 4 residues within 4Å: Chain B: C.12, C.13, G.15, A.39 No protein-ligand interaction detected (PLIP) NCO.6: 6 residues within 4Å: Chain B: A.19, G.20, G.21, U.22, A.32 Ligands: NCO.8 No protein-ligand interaction detected (PLIP) NCO.7: 3 residues within 4Å: Chain B: C.24, G.25, A.27 No protein-ligand interaction detected (PLIP) NCO.8: 5 residues within 4Å: Chain B: G.25, A.28, G.29, G.30 Ligands: NCO.6 No protein-ligand interaction detected (PLIP) NCO.9: 4 residues within 4Å: Chain B: U.17, C.18, A.32, G.33 No protein-ligand interaction detected (PLIP) NCO.10: 6 residues within 4Å: Chain B: C.3, U.4, C.5, G.42, A.44 Ligands: CL.3 No protein-ligand interaction detected (PLIP) NCO.11: 3 residues within 4Å: Chain B: G.1, G.2, C.48 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batey, R.T. et al., Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly. Biochemistry (2002)

Release Date

2010-03-02

Peptides

Signal recognition particle protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Signal recognition particle protein

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