SMTL ID : 3lsh.1

Pyranose 2-oxidase T169A, monoclinic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: V.52, G.53, G.55, P.56, I.57, D.76, I.77, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, A.169, C.170, A.171, V.281, C.283, T.319, A.320, G.321, H.324, F.454, L.547, H.548, C.583, N.593, P.594, T.595 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:I.107, A:W.168, A:F.454, A:L.547 Hydrogen bonds: A:G.55, A:I.57, A:G.58, A:I.77, A:G.78, A:T.158, A:V.160, A:G.163, A:M.164, A:M.164, A:A.169, A:A.171, A:A.171, A:C.283, A:C.283, A:N.593, A:T.595, A:T.595 Water bridges: A:G.321, A:L.596 pi-Stacking: A:W.168, A:H.548 FAD.2: 34 residues within 4Å: Chain B: V.52, G.53, G.55, P.56, I.57, F.75, D.76, I.77, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, A.169, C.170, A.171, V.281, A.282, C.283, T.319, A.320, G.321, H.324, F.454, L.547, H.548, C.583, N.593, P.594, T.595 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:I.107, B:W.168, B:F.454, B:L.547 Hydrogen bonds: B:I.57, B:G.58, B:I.77, B:T.158, B:V.160, B:G.163, B:M.164, B:S.165, B:A.169, B:A.171, B:A.171, B:C.283, B:C.283, B:N.593, B:T.595, B:T.595 Water bridges: B:G.55, B:G.321, B:Q.448, B:L.547, B:L.596 pi-Stacking: B:W.168, B:H.548 FAD.4: 34 residues within 4Å: Chain C: V.52, G.53, G.55, P.56, I.57, F.75, D.76, I.77, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, A.169, C.170, A.171, V.281, C.283, T.319, A.320, G.321, H.324, F.454, L.547, H.548, G.582, C.583, N.593, P.594, T.595 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:I.107, C:W.168, C:F.454, C:L.547 Hydrogen bonds: C:G.55, C:I.57, C:G.58, C:I.77, C:T.158, C:V.160, C:G.163, C:M.164, C:S.165, C:A.169, C:A.171, C:A.171, C:C.283, C:C.283, C:N.593, C:T.595, C:T.595 Water bridges: C:G.321, C:L.547 pi-Stacking: C:W.168, C:H.548 FAD.5: 34 residues within 4Å: Chain D: V.52, G.53, S.54, G.55, P.56, I.57, D.76, I.77, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, A.169, C.170, A.171, V.281, A.282, C.283, T.319, A.320, G.321, H.324, F.454, L.547, H.548, C.583, N.593, P.594, T.595 24 PLIP interactions: 24 interactions with chain D Hydrophobic interactions: D:I.107, D:F.454, D:L.547 Hydrogen bonds: D:I.57, D:I.77, D:T.158, D:V.160, D:G.163, D:M.164, D:M.164, D:A.169, D:A.171, D:A.171, D:C.283, D:C.283, D:N.593, D:T.595, D:T.595 Water bridges: D:G.55, D:G.58, D:Q.448, D:L.547, D:L.596 pi-Stacking: D:W.168

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 7 residues within 4Å: Chain C: G.398, A.399, S.400, N.402, K.403, H.404, P.405 1 PLIP interactions: 1 interactions with chain C Water bridges: C:D.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, T.C. et al., H-bonding and positive charge at the N5/O4 locus are critical for covalent flavin attachment in trametes pyranose 2-oxidase. J.Mol.Biol. (2010)

Release Date

2010-08-25

Peptides

Pyranose 2-oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyranose 2-oxidase

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