SMTL ID : 3lt8.1

A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding, crystallized in the presence of 100 mM ATP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.48, A:C.51 ZN.7: 4 residues within 4Å: Chain B: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.25, B:C.28, B:C.48, B:C.51

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: N.34, K.36, R.43, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.34, A:N.46, A:M.47, A:M.47, A:G.65, A:H.66 Salt bridges: A:K.36, A:K.36, A:K.38, A:R.43, A:R.43 pi-Stacking: A:Y.45, A:F.52, A:F.52 ADP.8: 12 residues within 4Å: Chain B: N.34, K.36, R.43, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:N.34, B:Y.45, B:N.46, B:M.47, B:M.47, B:G.65, B:H.66 Salt bridges: B:K.36, B:K.36, B:K.38, B:R.43, B:R.43 pi-Stacking: B:Y.45, B:F.52, B:F.52

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 1 residues within 4Å: Chain A: N.54 No protein-ligand interaction detected (PLIP) PEG.4: 3 residues within 4Å: Chain A: R.23 Chain B: W.15, R.18 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.23, B:K.11 PEG.5: 1 residues within 4Å: Chain A: W.35 No protein-ligand interaction detected (PLIP) PEG.9: 1 residues within 4Å: Chain B: N.54 No protein-ligand interaction detected (PLIP) PEG.10: 3 residues within 4Å: Chain A: W.15, R.18 Chain B: R.23 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.23, A:K.11 PEG.11: 1 residues within 4Å: Chain B: W.35 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: K.12, W.69, L.70 Chain B: W.69, L.70 Ligands: CL.12 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: W.69, L.70 Chain B: K.12, W.69, L.70 Ligands: CL.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simmons, C.R. et al., Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry (2010)

Release Date

2010-09-22

Peptides

ATP BINDING PROTEIN-D65V: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP BINDING PROTEIN-D65V

Related Entries With Identical Sequence