SMTL ID : 3lta.1

Crystal structure of a non-biological ATP binding protein with a TYR-PHE mutation within the ligand binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.48, A:C.51 ZN.7: 4 residues within 4Å: Chain B: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.25, B:C.28, B:C.48, B:C.51

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 12 residues within 4Å: Chain A: D.34, K.38, R.43, F.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.43, A:M.47, A:M.47, A:G.65, A:H.66 Salt bridges: A:K.36, A:K.38 pi-Stacking: A:F.45, A:F.52, A:F.52 ATP.8: 12 residues within 4Å: Chain B: D.34, K.38, R.43, F.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.43, B:M.47, B:M.47, B:G.65, B:H.66 Salt bridges: B:K.36, B:K.38 pi-Stacking: B:F.45, B:F.52, B:F.52

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 1 residues within 4Å: Chain A: N.54 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.54 PEG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.5: 4 residues within 4Å: Chain A: N.14, W.15, R.18 Chain B: R.23 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.23 PEG.9: 1 residues within 4Å: Chain B: N.54 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.54 PEG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.11: 4 residues within 4Å: Chain A: R.23 Chain B: N.14, W.15, R.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.23

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: K.12, W.69, L.70 Chain B: W.69, L.70 Ligands: CL.12 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: W.69, L.70 Chain B: K.12, W.69, L.70 Ligands: CL.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simmons, C.R. et al., Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry (2010)

Release Date

2010-09-22

Peptides

ATP BINDING PROTEIN-DX: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP BINDING PROTEIN-DX

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